Wall clock time and date at job start Mon Mar 30 2020 01:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99790 * 2 1 4 4 H 1.48498 * 109.46944 * 269.99942 * 3 2 1 5 5 H 1.48496 * 109.47078 * 30.00210 * 3 2 1 6 6 H 1.48499 * 109.46955 * 150.00225 * 3 2 1 7 7 C 1.37879 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00029 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47556 * 59.99494 * 9 7 2 11 11 N 1.46905 * 109.46910 * 299.99533 * 9 7 2 12 12 C 1.50700 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38755 * 120.63112 * 124.71748 * 12 9 7 14 14 N 1.32200 * 119.11923 * 179.71698 * 13 12 9 15 15 N 1.28744 * 120.38568 * 0.56941 * 14 13 12 16 16 C 1.31974 * 121.36077 * 359.69973 * 15 14 13 17 17 N 1.32048 * 120.87140 * 0.02562 * 16 15 14 18 18 H 0.97001 * 119.99716 * 359.97438 * 1 2 3 19 19 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 20 20 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 21 21 H 1.07999 * 120.43897 * 0.02562 * 13 12 9 22 22 H 1.07998 * 119.56792 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8747 -0.6807 0.8905 11 7 4.0017 -0.5007 -1.1988 12 6 4.0140 -2.6148 -0.0001 13 6 4.8911 -3.0544 -0.9812 14 7 5.3173 -4.3054 -0.9494 15 7 4.9146 -5.1074 -0.0263 16 6 4.0764 -4.7089 0.9120 17 7 3.6221 -3.4692 0.9328 18 1 -0.4850 0.8401 0.0004 19 1 3.6784 -0.9578 -2.0383 20 1 3.7322 0.4715 -1.1898 21 1 5.2251 -2.3821 -1.7576 22 1 3.7570 -5.4062 1.6724 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260385308.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:30 Heat of formation + Delta-G solvation = 56.100277 kcal Electronic energy + Delta-G solvation = -10368.686355 eV Core-core repulsion = 8344.963971 eV Total energy + Delta-G solvation = -2023.722383 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.071 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.74757 -37.68466 -35.57037 -34.29152 -32.86101 -28.70425 -26.82560 -26.11528 -22.92895 -19.70126 -19.29257 -17.96984 -17.05063 -16.82651 -16.59224 -16.02814 -15.10077 -14.48411 -13.84773 -13.35926 -13.05593 -12.86134 -12.48498 -12.45014 -12.20066 -11.72215 -11.08040 -10.89582 -10.23549 -9.61652 -8.41412 -6.53278 -0.43394 -0.20844 1.27762 1.37355 1.45414 2.21545 2.54561 2.67432 2.88107 3.02734 3.23621 3.78026 4.10411 4.15423 4.53670 4.84603 5.02399 5.23232 5.91917 6.01497 6.21451 6.48645 6.59951 7.12233 7.43810 8.74846 Molecular weight = 180.07amu Principal moments of inertia in cm(-1) A = 0.071623 B = 0.013648 C = 0.012246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.842808 B = 2051.053606 C = 2286.005115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.020 3.980 3 Si 0.940 3.060 4 H -0.245 1.245 5 H -0.294 1.294 6 H -0.240 1.240 7 C -0.547 4.547 8 H 0.031 0.969 9 C 0.227 3.773 10 H 0.071 0.929 11 N -0.833 5.833 12 C 0.184 3.816 13 C 0.004 3.996 14 N -0.212 5.212 15 N -0.315 5.315 16 C 0.229 3.771 17 N -0.489 5.489 18 H 0.271 0.729 19 H 0.346 0.654 20 H 0.331 0.669 21 H 0.215 0.785 22 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 -0.998 -0.946 8.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.170 1.170 5 H -0.221 1.221 6 H -0.164 1.164 7 C -0.587 4.587 8 H 0.049 0.951 9 C 0.115 3.885 10 H 0.089 0.911 11 N -0.368 5.368 12 C 0.027 3.973 13 C -0.164 4.164 14 N -0.060 5.060 15 N -0.161 5.161 16 C -0.060 4.060 17 N -0.211 5.211 18 H 0.080 0.920 19 H 0.159 0.841 20 H 0.148 0.852 21 H 0.232 0.768 22 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 9.629 -2.141 -0.627 9.884 hybrid contribution -1.751 1.563 0.022 2.347 sum 7.878 -0.578 -0.604 7.923 Atomic orbital electron populations 1.70037 1.08400 1.28675 1.50215 1.25922 0.95637 1.03180 0.93257 0.85939 0.79313 0.78103 0.80289 1.16992 1.22105 1.16395 1.21507 0.90635 0.93661 1.52939 0.95104 1.18120 0.91947 0.85761 0.92662 0.91120 1.59528 1.65881 1.06310 1.05081 1.22750 0.88238 0.97352 0.88922 1.25273 0.95404 0.95405 1.00346 1.73573 1.16174 1.01975 1.14321 1.73470 1.12124 1.28770 1.01740 1.27050 0.90000 0.92117 0.96869 1.68879 1.22094 1.04136 1.25951 0.91964 0.84129 0.85182 0.76839 0.74235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.02 13.96 21.45 0.30 -54.72 14 2 C 0.02 1.08 5.47 84.65 0.46 1.54 14 3 Si 0.94 38.84 24.61 68.60 1.69 40.53 14 4 H -0.25 -9.08 7.01 99.48 0.70 -8.38 14 5 H -0.29 -12.49 7.11 99.48 0.71 -11.78 14 6 H -0.24 -9.18 6.54 99.48 0.65 -8.53 14 7 C -0.55 -29.09 9.13 25.60 0.23 -28.86 14 8 H 0.03 1.90 7.95 -2.91 -0.02 1.87 14 9 C 0.23 9.68 2.74 43.42 0.12 9.80 14 10 H 0.07 3.10 7.20 -2.39 -0.02 3.08 14 11 N -0.83 -29.73 7.98 -174.94 -1.40 -31.13 14 12 C 0.18 7.34 6.13 42.59 0.26 7.60 14 13 C 0.00 0.15 10.48 84.76 0.89 1.04 14 14 N -0.21 -7.54 11.63 -57.02 -0.66 -8.20 14 15 N -0.31 -10.99 11.57 -61.24 -0.71 -11.70 14 16 C 0.23 7.62 12.39 180.75 2.24 9.86 14 17 N -0.49 -19.73 10.23 -187.60 -1.92 -21.65 14 18 H 0.27 14.85 8.31 -92.71 -0.77 14.08 14 19 H 0.35 11.52 8.31 -89.69 -0.75 10.77 14 20 H 0.33 11.86 4.29 -89.70 -0.39 11.48 14 21 H 0.22 6.08 6.77 -2.91 -0.02 6.06 14 22 H 0.24 5.64 8.06 -2.91 -0.02 5.62 14 Total: -1.00 -63.20 197.87 1.58 -61.62 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.07 Total: 24.26 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 4.20 Total: 0.98 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -4.39 Total: -127.39 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.69 Total: 40.53 kcal Total: -63.20 1.58 -61.62 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385308.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.720 kcal (2) G-P(sol) polarization free energy of solvation -63.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds