Wall clock time and date at job start Mon Mar 30 2020 02:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39600 * 126.41110 * 2 1 4 4 N 1.40383 * 126.09521 * 0.02562 * 3 2 1 5 5 C 1.37660 * 107.80900 * 179.73879 * 3 2 1 6 6 N 1.36514 * 108.71154 * 0.26482 * 5 3 2 7 7 C 1.46507 * 125.68427 * 180.02562 * 6 5 3 8 8 C 1.38020 * 108.62716 * 0.02562 * 6 5 3 9 9 C 1.39908 * 126.17085 * 180.02562 * 8 6 5 10 10 H 1.07996 * 120.00243 * 219.86920 * 9 8 6 11 11 C 1.40013 * 119.99967 * 39.86853 * 9 8 6 12 12 N 1.30894 * 119.99827 * 18.79883 * 11 9 8 13 13 Si 1.86803 * 119.99983 * 198.80076 * 11 9 8 14 14 H 1.48505 * 109.47133 * 60.00109 * 13 11 9 15 15 H 1.48499 * 109.46855 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46925 * 299.99863 * 13 11 9 17 17 H 1.09004 * 109.47105 * 90.01753 * 1 2 3 18 18 H 1.09005 * 109.47319 * 210.02109 * 1 2 3 19 19 H 1.08999 * 109.46676 * 330.01944 * 1 2 3 20 20 H 0.96998 * 120.00084 * 179.71132 * 4 3 2 21 21 H 0.97000 * 119.99674 * 359.43089 * 4 3 2 22 22 H 1.08000 * 125.64372 * 180.28713 * 5 3 2 23 23 H 1.09005 * 109.47234 * 89.51646 * 7 6 5 24 24 H 1.09002 * 109.46940 * 209.51417 * 7 6 5 25 25 H 1.08994 * 109.46975 * 329.51500 * 7 6 5 26 26 H 0.97000 * 119.99728 * 174.87137 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3356 1.1235 0.0000 4 7 1.9136 2.4624 0.0005 5 6 3.6403 0.6844 0.0060 6 7 3.6429 -0.6808 0.0037 7 6 4.8345 -1.5331 0.0089 8 6 2.3359 -1.1241 -0.0043 9 6 1.9167 -2.4589 -0.0084 10 1 1.0735 -2.7583 -0.6132 11 6 2.5904 -3.4066 0.7715 12 7 3.3497 -3.0170 1.7640 13 14 2.4058 -5.2271 0.3957 14 1 2.8787 -5.4979 -0.9857 15 1 3.2151 -6.0159 1.3590 16 1 0.9772 -5.6147 0.5148 17 1 -0.3633 -0.0003 -1.0277 18 1 -0.3634 -0.8898 0.5142 19 1 -0.3632 0.8902 0.5135 20 1 2.5690 3.1775 0.0047 21 1 0.9667 2.6724 -0.0074 22 1 4.5167 1.3154 0.0119 23 1 5.1294 -1.7392 1.0379 24 1 4.6126 -2.4710 -0.5002 25 1 5.6481 -1.0233 -0.5070 26 1 3.7568 -3.6739 2.3502 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260395774.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:02 Heat of formation + Delta-G solvation = 13.685869 kcal Electronic energy + Delta-G solvation = -10806.851152 eV Core-core repulsion = 8884.829885 eV Total energy + Delta-G solvation = -1922.021267 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.90772 -35.77733 -34.61305 -32.64617 -29.91487 -29.20128 -25.51952 -24.94376 -21.19405 -19.75328 -18.57739 -16.94062 -16.78933 -16.07466 -15.43220 -15.10321 -14.31611 -13.89474 -13.82126 -13.40005 -13.13827 -12.76479 -12.58114 -12.38629 -12.15146 -12.01769 -11.61617 -11.01472 -10.51214 -8.55330 -8.33475 -7.54176 -6.13258 1.36130 1.43296 1.53030 2.06041 2.30454 2.64105 2.87602 3.29973 3.78320 4.41693 4.71740 4.75734 4.88511 5.05395 5.08141 5.19775 5.38217 5.44444 5.67138 5.91507 6.22001 6.34063 6.74797 6.88639 7.30176 7.40824 7.54604 7.71224 8.52730 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.056133 B = 0.015620 C = 0.013014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.694606 B = 1792.153523 C = 2150.952123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.363 4.363 3 C 0.134 3.866 4 N -0.873 5.873 5 C -0.208 4.208 6 N -0.456 5.456 7 C 0.117 3.883 8 C 0.229 3.771 9 C -0.505 4.505 10 H 0.078 0.922 11 C 0.042 3.958 12 N -0.848 5.848 13 Si 0.972 3.028 14 H -0.263 1.263 15 H -0.272 1.272 16 H -0.265 1.265 17 H 0.034 0.966 18 H 0.034 0.966 19 H 0.048 0.952 20 H 0.393 0.607 21 H 0.394 0.606 22 H 0.144 0.856 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 1.663 -2.124 2.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.372 4.372 3 C 0.029 3.971 4 N -0.420 5.420 5 C -0.335 4.335 6 N -0.137 5.137 7 C -0.026 4.026 8 C 0.114 3.886 9 C -0.540 4.540 10 H 0.096 0.904 11 C -0.170 4.170 12 N -0.479 5.479 13 Si 0.794 3.206 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.189 1.189 17 H 0.053 0.947 18 H 0.053 0.947 19 H 0.067 0.933 20 H 0.221 0.779 21 H 0.221 0.779 22 H 0.161 0.839 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.216 1.371 -1.984 2.701 hybrid contribution 0.013 -0.406 0.129 0.426 sum 1.229 0.965 -1.855 2.425 Atomic orbital electron populations 1.19484 0.90964 0.99456 0.98690 1.19622 0.95015 0.91377 1.31154 1.17062 0.91925 0.85139 1.02969 1.41301 1.08724 1.01870 1.90127 1.20960 0.96117 0.83815 1.32626 1.43909 1.05738 1.04801 1.59254 1.21523 0.85607 0.93910 1.01537 1.17937 0.81521 0.93410 0.95759 1.18546 1.15850 0.91650 1.27958 0.90424 1.26474 0.92722 1.04774 0.93070 1.69902 1.27594 1.37799 1.12557 0.85401 0.79268 0.76913 0.78980 1.18755 1.19655 1.18915 0.94682 0.94727 0.93303 0.77901 0.77884 0.83889 0.92608 0.92665 0.91068 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.28 10.04 71.24 0.72 -0.56 15 2 C -0.36 -19.08 6.25 -19.19 -0.12 -19.20 15 3 C 0.13 6.45 7.26 37.96 0.28 6.72 15 4 N -0.87 -32.03 9.17 -51.25 -0.47 -32.50 15 5 C -0.21 -10.18 11.52 83.83 0.97 -9.21 15 6 N -0.46 -23.84 3.14 -536.35 -1.68 -25.52 15 7 C 0.12 5.32 9.26 127.77 1.18 6.50 15 8 C 0.23 12.89 6.06 38.92 0.24 13.13 15 9 C -0.50 -27.98 8.60 23.11 0.20 -27.78 15 10 H 0.08 4.24 7.91 -2.91 -0.02 4.22 15 11 C 0.04 2.14 4.12 85.26 0.35 2.50 15 12 N -0.85 -44.83 10.70 21.85 0.23 -44.59 15 13 Si 0.97 39.17 29.60 68.60 2.03 41.20 15 14 H -0.26 -10.32 7.11 99.48 0.71 -9.62 15 15 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 16 H -0.26 -10.48 7.11 99.48 0.71 -9.77 15 17 H 0.03 1.45 8.14 -2.39 -0.02 1.43 15 18 H 0.03 1.59 7.96 -2.38 -0.02 1.57 15 19 H 0.05 1.91 7.73 -2.39 -0.02 1.90 15 20 H 0.39 12.12 8.96 -92.71 -0.83 11.29 15 21 H 0.39 12.89 8.39 -92.71 -0.78 12.11 15 22 H 0.14 6.13 8.06 -2.91 -0.02 6.10 15 23 H 0.06 2.63 7.03 -2.38 -0.02 2.61 15 24 H 0.05 2.55 7.03 -2.39 -0.02 2.54 15 25 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15 26 H 0.28 13.69 8.30 -92.71 -0.77 12.92 15 Total: -1.00 -62.54 224.71 3.50 -59.04 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -0.41 Total: 30.28 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 3.81 Total: -27.90 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -1.92 Total: -102.61 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -62.54 3.50 -59.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395774.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.725 kcal (2) G-P(sol) polarization free energy of solvation -62.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds