Wall clock time and date at job start Mon Mar 30 2020 02:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 C 1.50707 * 109.47009 * 65.00166 * 3 2 1 14 14 C 1.39869 * 125.89915 * 84.71420 * 13 3 2 15 15 C 1.35311 * 107.92000 * 179.86903 * 14 13 3 16 16 N 1.34953 * 107.74548 * 0.39052 * 15 14 13 17 17 H 0.97001 * 126.03776 * 179.74482 * 16 15 14 18 18 N 1.30838 * 125.89945 * 265.02937 * 13 3 2 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 25 25 H 1.07997 * 126.03565 * 359.97438 * 14 13 3 26 26 H 1.07999 * 126.13274 * 180.14968 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 6 1.6414 2.1162 1.2878 14 6 2.3418 2.0541 2.4969 15 6 1.6647 2.7900 3.4085 16 7 0.5699 3.2926 2.8002 17 1 -0.1034 3.8566 3.2119 18 7 0.5773 2.8556 1.4694 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 3.8292 -0.0609 -2.9500 25 1 3.2614 1.5156 2.6714 26 1 1.9474 2.9440 4.4394 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260425675.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:13 Heat of formation + Delta-G solvation = 58.812160 kcal Electronic energy + Delta-G solvation = -10666.683805 eV Core-core repulsion = 8746.619361 eV Total energy + Delta-G solvation = -1920.064444 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.28310 -34.94889 -31.70160 -30.14684 -29.14199 -27.11083 -23.28211 -20.99403 -20.56988 -18.22657 -17.34934 -15.97859 -14.64752 -14.00152 -13.55257 -12.84136 -12.64481 -12.50195 -12.05796 -11.24033 -11.00087 -10.80298 -10.62115 -10.02050 -9.86250 -9.75301 -9.48866 -8.87990 -8.41813 -8.19660 -7.87341 -5.95457 -4.00926 2.66329 3.36280 3.40640 3.42923 3.65509 3.81097 4.48153 5.35604 5.45440 5.77383 6.36961 6.39564 6.45254 6.62720 6.73743 6.86959 7.07512 7.24214 7.42345 7.62047 7.77275 7.92703 8.02202 8.17890 8.40478 8.70811 9.01233 9.62486 11.10884 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.047431 B = 0.014574 C = 0.011940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.194185 B = 1920.722278 C = 2344.492670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C 0.117 3.883 4 H 0.041 0.959 5 C -0.507 4.507 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.126 3.874 14 C -0.251 4.251 15 C 0.027 3.973 16 N -0.502 5.502 17 H 0.426 0.574 18 N -0.320 5.320 19 H 0.038 0.962 20 H 0.031 0.969 21 H 0.044 0.956 22 H 0.034 0.966 23 H 0.099 0.901 24 H 0.261 0.739 25 H 0.143 0.857 26 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 1.896 7.893 8.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C 0.096 3.904 4 H 0.059 0.941 5 C -0.546 4.546 6 H 0.079 0.921 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.040 4.040 14 C -0.281 4.281 15 C -0.119 4.119 16 N -0.209 5.209 17 H 0.268 0.732 18 N -0.142 5.142 19 H 0.057 0.943 20 H 0.050 0.950 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.117 0.883 24 H 0.071 0.929 25 H 0.161 0.839 26 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.495 2.294 7.194 8.320 hybrid contribution 1.421 0.000 0.674 1.572 sum -2.074 2.294 7.867 8.453 Atomic orbital electron populations 1.21832 0.99162 0.98832 1.00470 1.21530 0.91763 0.98889 1.02554 1.17391 0.95648 0.91172 0.86140 0.94111 1.21096 0.90492 1.37517 1.05478 0.92104 1.24935 0.98123 0.95299 0.95617 1.69868 1.34902 1.38607 1.09492 0.86613 0.85663 0.78196 0.77256 1.20234 1.21339 1.20348 1.23332 0.89723 0.93042 0.97951 1.21532 1.04582 1.08703 0.93254 1.22395 0.90647 0.99928 0.98969 1.46305 1.21308 1.43705 1.09577 0.73235 1.77322 1.23355 1.19962 0.93593 0.94337 0.95035 0.93685 0.94721 0.88265 0.92872 0.83947 0.82046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.73 37.16 0.36 -2.78 15 2 C -0.11 -2.66 5.23 -26.73 -0.14 -2.80 15 3 C 0.12 3.05 2.24 -92.92 -0.21 2.84 15 4 H 0.04 1.17 8.14 -51.93 -0.42 0.75 15 5 C -0.51 -13.91 8.27 -34.44 -0.28 -14.20 15 6 H 0.06 1.64 6.86 -52.48 -0.36 1.28 15 7 C 0.06 1.69 5.29 -17.82 -0.09 1.59 15 8 N -0.89 -25.25 11.29 55.43 0.63 -24.62 15 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 15 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 13 C 0.13 2.96 5.23 -82.40 -0.43 2.53 15 14 C -0.25 -5.16 9.69 -40.01 -0.39 -5.54 15 15 C 0.03 0.44 11.99 -17.22 -0.21 0.23 15 16 N -0.50 -8.54 7.36 30.45 0.22 -8.31 15 17 H 0.43 5.40 8.96 -182.62 -1.64 3.76 15 18 N -0.32 -7.03 12.27 33.67 0.41 -6.61 15 19 H 0.04 0.82 7.04 -51.93 -0.37 0.46 15 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.04 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.03 0.83 8.14 -51.93 -0.42 0.40 15 23 H 0.10 2.65 5.95 -51.93 -0.31 2.34 15 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 25 H 0.14 2.85 7.73 -52.49 -0.41 2.45 15 26 H 0.16 1.87 8.06 -52.49 -0.42 1.44 15 LS Contribution 224.93 15.07 3.39 3.39 Total: -1.00 -30.24 224.93 -6.08 -36.32 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.33 Total: 1.83 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.39 Total: -18.13 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 1.26 Total: -39.55 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -30.24 -6.08 -36.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425675.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.137 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds