Wall clock time and date at job start Mon Mar 30 2020 02:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 C 1.50707 * 109.47009 * 65.00166 * 3 2 1 14 14 C 1.39869 * 125.89915 * 84.71420 * 13 3 2 15 15 C 1.35311 * 107.92000 * 179.86903 * 14 13 3 16 16 N 1.34953 * 107.74548 * 0.39052 * 15 14 13 17 17 H 0.97001 * 126.03776 * 179.74482 * 16 15 14 18 18 N 1.30838 * 125.89945 * 265.02937 * 13 3 2 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 25 25 H 1.07997 * 126.03565 * 359.97438 * 14 13 3 26 26 H 1.07999 * 126.13274 * 180.14968 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 6 1.6414 2.1162 1.2878 14 6 2.3418 2.0541 2.4969 15 6 1.6647 2.7900 3.4085 16 7 0.5699 3.2926 2.8002 17 1 -0.1034 3.8566 3.2119 18 7 0.5773 2.8556 1.4694 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 3.8292 -0.0609 -2.9500 25 1 3.2614 1.5156 2.6714 26 1 1.9474 2.9440 4.4394 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260425675.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:13 Heat of formation + Delta-G solvation = 38.712779 kcal Electronic energy + Delta-G solvation = -10667.555379 eV Core-core repulsion = 8746.619361 eV Total energy + Delta-G solvation = -1920.936019 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.82195 -36.87656 -33.71438 -31.80532 -30.66438 -29.03530 -25.29129 -22.78313 -22.08188 -20.00207 -18.83320 -18.01672 -16.58688 -15.73811 -15.25503 -14.63258 -14.19288 -14.17059 -13.85723 -13.12695 -12.89091 -12.67292 -12.47352 -11.93584 -11.69321 -11.50665 -11.42592 -10.83721 -10.40829 -9.94710 -9.38388 -8.04608 -6.17610 1.21332 1.47525 1.49455 1.56901 2.15135 2.31494 2.51225 3.23757 4.13376 4.29803 4.57135 4.62654 4.76003 4.92134 5.12046 5.19680 5.28158 5.40034 5.50369 5.68894 5.85780 5.92468 6.17196 6.36962 6.76752 6.88759 7.09173 7.49284 9.01179 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.047431 B = 0.014574 C = 0.011940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.194185 B = 1920.722278 C = 2344.492670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.102 4.102 3 C 0.118 3.882 4 H -0.003 1.003 5 C -0.523 4.523 6 H 0.061 0.939 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.275 1.275 13 C 0.098 3.902 14 C -0.291 4.291 15 C 0.070 3.930 16 N -0.481 5.481 17 H 0.448 0.552 18 N -0.352 5.352 19 H 0.040 0.960 20 H 0.056 0.944 21 H 0.035 0.965 22 H 0.034 0.966 23 H 0.073 0.927 24 H 0.262 0.738 25 H 0.139 0.861 26 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 2.380 9.995 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C 0.097 3.903 4 H 0.015 0.985 5 C -0.562 4.562 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.200 1.200 13 C -0.067 4.067 14 C -0.321 4.321 15 C -0.078 4.078 16 N -0.191 5.191 17 H 0.294 0.706 18 N -0.176 5.176 19 H 0.059 0.941 20 H 0.075 0.925 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.157 0.843 26 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.225 2.791 9.301 10.233 hybrid contribution 1.258 -0.079 0.100 1.264 sum -1.967 2.711 9.401 9.980 Atomic orbital electron populations 1.21678 0.96934 1.00294 1.00079 1.21367 0.93735 0.97891 1.01094 1.17163 0.94907 0.91708 0.86518 0.98480 1.21394 0.91537 1.37551 1.05696 0.92117 1.25746 1.02711 0.94893 0.95253 1.70012 1.36674 1.39168 1.09891 0.85580 0.80117 0.78263 0.77499 1.19129 1.20983 1.20022 1.22954 0.91341 0.94472 0.97935 1.21630 1.05654 1.11446 0.93343 1.23094 0.88258 0.96044 1.00393 1.46300 1.21930 1.42783 1.08058 0.70610 1.77202 1.23340 1.20628 0.96434 0.94087 0.92545 0.94601 0.94704 0.90897 0.92882 0.84293 0.76058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 9.73 71.98 0.70 -5.05 15 2 C -0.10 -5.13 5.23 30.59 0.16 -4.97 15 3 C 0.12 6.34 2.24 -12.29 -0.03 6.31 15 4 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 15 5 C -0.52 -29.40 8.27 25.60 0.21 -29.19 15 6 H 0.06 3.32 6.86 -2.91 -0.02 3.30 15 7 C 0.01 0.70 5.29 84.66 0.45 1.14 15 8 N -0.92 -53.55 11.29 21.45 0.24 -53.31 15 9 Si 0.96 43.71 29.54 68.60 2.03 45.74 15 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 15 13 C 0.10 4.63 5.23 43.10 0.23 4.85 15 14 C -0.29 -11.53 9.69 21.99 0.21 -11.31 15 15 C 0.07 2.01 11.99 83.54 1.00 3.01 15 16 N -0.48 -14.80 7.36 -57.59 -0.42 -15.23 15 17 H 0.45 9.56 8.96 -213.34 -1.91 7.64 15 18 N -0.35 -15.19 12.27 -47.38 -0.58 -15.77 15 19 H 0.04 1.73 7.04 -2.39 -0.02 1.72 15 20 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 21 H 0.03 1.58 8.14 -2.38 -0.02 1.56 15 22 H 0.03 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.07 4.04 5.95 -2.39 -0.01 4.03 15 24 H 0.26 14.51 8.31 -92.71 -0.77 13.73 15 25 H 0.14 5.46 7.73 -2.91 -0.02 5.44 15 26 H 0.22 3.61 8.06 -2.91 -0.02 3.59 15 Total: -1.00 -67.12 224.93 3.46 -63.66 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -0.74 Total: 10.12 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 2.93 Total: -35.22 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -0.76 Total: -84.31 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -67.12 3.46 -63.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425675.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.377 kcal (2) G-P(sol) polarization free energy of solvation -67.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds