Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47259 * 2 1 4 4 H 1.08999 * 109.47006 * 305.59608 * 3 2 1 5 5 C 1.50700 * 109.47178 * 65.59414 * 3 2 1 6 6 H 1.08005 * 119.99647 * 28.14102 * 5 3 2 7 7 C 1.37871 * 120.00157 * 208.13962 * 5 3 2 8 8 N 1.31516 * 120.00109 * 5.96591 * 7 5 3 9 9 Si 1.86805 * 120.00139 * 185.95866 * 7 5 3 10 10 H 1.48503 * 109.46754 * 90.00298 * 9 7 5 11 11 H 1.48498 * 109.47175 * 210.00385 * 9 7 5 12 12 H 1.48492 * 109.47057 * 330.00173 * 9 7 5 13 13 C 1.50699 * 109.47407 * 185.59610 * 3 2 1 14 14 C 1.39865 * 125.90011 * 274.98406 * 13 3 2 15 15 C 1.35316 * 107.92488 * 180.02562 * 14 13 3 16 16 N 1.34951 * 107.74374 * 0.02562 * 15 14 13 17 17 H 0.96998 * 126.04247 * 179.97438 * 16 15 14 18 18 N 1.30841 * 125.89662 * 95.01962 * 13 3 2 19 19 H 1.08994 * 109.47108 * 173.95815 * 1 2 3 20 20 H 1.09005 * 109.47160 * 293.95729 * 1 2 3 21 21 H 1.08994 * 109.47233 * 53.95553 * 1 2 3 22 22 H 1.09000 * 109.47176 * 239.99749 * 2 1 3 23 23 H 1.09001 * 109.47550 * 119.99689 * 2 1 3 24 24 H 0.97002 * 120.00113 * 180.02562 * 8 7 5 25 25 H 1.08001 * 126.03979 * 0.02562 * 14 13 3 26 26 H 1.07995 * 126.13279 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9845 -0.8356 5 6 1.6540 2.1118 1.2938 6 1 1.5281 1.5225 2.1901 7 6 1.4616 3.4765 1.3335 8 7 1.4991 4.1784 0.2219 9 14 1.1472 4.3285 2.9659 10 1 2.4412 4.7436 3.5647 11 1 0.2977 5.5260 2.7438 12 1 0.4531 3.3931 3.8868 13 6 3.5406 1.4448 -0.1385 14 6 4.4609 1.3110 0.9062 15 6 5.7044 1.3633 0.3750 16 7 5.5755 1.5251 -0.9585 17 1 6.3017 1.5956 -1.5977 18 7 4.2076 1.5730 -1.2569 19 1 -0.3633 -1.0219 -0.1082 20 1 -0.3634 0.4173 0.9392 21 1 -0.3633 0.6047 -0.8309 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.3641 5.1386 0.2498 25 1 4.2214 1.1877 1.9520 26 1 6.6335 1.2889 0.9205 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260425688.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = 55.778781 kcal Electronic energy + Delta-G solvation = -10666.501999 eV Core-core repulsion = 8746.306018 eV Total energy + Delta-G solvation = -1920.195981 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.01772 -34.89743 -31.76573 -30.30038 -28.89212 -26.71194 -23.74832 -20.66070 -20.31830 -18.37087 -17.25404 -16.07429 -14.47644 -13.59536 -13.53562 -13.18635 -12.49662 -12.40959 -12.14339 -11.29625 -10.94473 -10.92241 -10.39147 -10.25462 -9.97957 -9.64866 -9.38301 -8.92004 -8.40363 -8.11962 -7.65539 -5.97675 -4.01118 2.88147 3.33875 3.41045 3.43092 3.85699 4.05812 4.47613 5.34268 5.62537 5.97652 6.23988 6.29661 6.45062 6.67150 6.85631 6.93660 7.05177 7.11234 7.28802 7.38286 7.82905 7.86558 7.98508 8.18981 8.41800 8.93228 9.07709 9.62920 11.11547 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.033947 B = 0.017733 C = 0.013688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.619282 B = 1578.640153 C = 2045.130415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 C 0.101 3.899 4 H 0.068 0.932 5 C -0.502 4.502 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.272 1.272 13 C 0.134 3.866 14 C -0.244 4.244 15 C 0.019 3.981 16 N -0.505 5.505 17 H 0.423 0.577 18 N -0.323 5.323 19 H 0.029 0.971 20 H 0.061 0.939 21 H 0.047 0.953 22 H 0.033 0.967 23 H 0.046 0.954 24 H 0.260 0.740 25 H 0.138 0.862 26 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.618 -4.986 1.055 6.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.140 4.140 3 C 0.081 3.919 4 H 0.086 0.914 5 C -0.541 4.541 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.197 1.197 13 C -0.034 4.034 14 C -0.274 4.274 15 C -0.126 4.126 16 N -0.212 5.212 17 H 0.264 0.736 18 N -0.146 5.146 19 H 0.048 0.952 20 H 0.080 0.920 21 H 0.066 0.934 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.156 0.844 26 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.525 -4.644 -0.256 6.489 hybrid contribution 0.623 0.711 1.544 1.811 sum 5.148 -3.933 1.288 6.605 Atomic orbital electron populations 1.21589 0.96437 0.98512 1.02460 1.21437 0.95426 0.98141 0.98974 1.17540 0.82727 0.91979 0.99677 0.91388 1.20915 1.46485 0.91999 0.94659 0.92278 1.25012 0.94694 0.97793 0.95993 1.69969 1.49007 1.06894 1.26123 0.86669 0.78103 0.79252 0.84454 1.20719 1.21378 1.19721 1.23644 0.99220 0.92009 0.88509 1.21440 0.90795 1.14248 1.00914 1.22332 0.99635 1.04944 0.85724 1.46304 1.07346 1.61474 1.06087 0.73584 1.77310 0.85469 1.27550 1.24228 0.95214 0.92010 0.93423 0.94868 0.93506 0.92976 0.84395 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.63 37.16 0.36 -2.28 15 2 C -0.10 -2.20 5.37 -26.73 -0.14 -2.35 15 3 C 0.10 2.60 2.29 -92.92 -0.21 2.39 15 4 H 0.07 1.96 7.43 -51.93 -0.39 1.58 15 5 C -0.50 -13.47 6.77 -34.44 -0.23 -13.70 15 6 H 0.06 1.55 7.82 -52.48 -0.41 1.14 15 7 C 0.07 1.89 5.45 -17.82 -0.10 1.80 15 8 N -0.88 -26.07 12.87 55.43 0.71 -25.35 15 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 15 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 13 C 0.13 3.32 6.12 -82.41 -0.50 2.81 15 14 C -0.24 -5.39 10.02 -40.01 -0.40 -5.80 15 15 C 0.02 0.35 11.99 -17.22 -0.21 0.15 15 16 N -0.51 -9.60 7.36 30.45 0.22 -9.38 15 17 H 0.42 6.18 8.96 -182.61 -1.64 4.55 15 18 N -0.32 -7.77 12.70 33.67 0.43 -7.35 15 19 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 20 H 0.06 1.27 7.60 -51.93 -0.39 0.87 15 21 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 22 H 0.03 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 25 H 0.14 2.93 7.99 -52.49 -0.42 2.51 15 26 H 0.16 2.11 8.06 -52.49 -0.42 1.68 15 LS Contribution 230.17 15.07 3.47 3.47 Total: -1.00 -31.22 230.17 -6.12 -37.34 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.50 Total: 2.03 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -1.44 Total: -16.98 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 1.36 Total: -42.08 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -31.22 -6.12 -37.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425688.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.120 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds