Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47259 * 2 1 4 4 H 1.08999 * 109.47006 * 305.59608 * 3 2 1 5 5 C 1.50700 * 109.47178 * 65.59414 * 3 2 1 6 6 H 1.08005 * 119.99647 * 28.14102 * 5 3 2 7 7 C 1.37871 * 120.00157 * 208.13962 * 5 3 2 8 8 N 1.31516 * 120.00109 * 5.96591 * 7 5 3 9 9 Si 1.86805 * 120.00139 * 185.95866 * 7 5 3 10 10 H 1.48503 * 109.46754 * 90.00298 * 9 7 5 11 11 H 1.48498 * 109.47175 * 210.00385 * 9 7 5 12 12 H 1.48492 * 109.47057 * 330.00173 * 9 7 5 13 13 C 1.50699 * 109.47407 * 185.59610 * 3 2 1 14 14 C 1.39865 * 125.90011 * 274.98406 * 13 3 2 15 15 C 1.35316 * 107.92488 * 180.02562 * 14 13 3 16 16 N 1.34951 * 107.74374 * 0.02562 * 15 14 13 17 17 H 0.96998 * 126.04247 * 179.97438 * 16 15 14 18 18 N 1.30841 * 125.89662 * 95.01962 * 13 3 2 19 19 H 1.08994 * 109.47108 * 173.95815 * 1 2 3 20 20 H 1.09005 * 109.47160 * 293.95729 * 1 2 3 21 21 H 1.08994 * 109.47233 * 53.95553 * 1 2 3 22 22 H 1.09000 * 109.47176 * 239.99749 * 2 1 3 23 23 H 1.09001 * 109.47550 * 119.99689 * 2 1 3 24 24 H 0.97002 * 120.00113 * 180.02562 * 8 7 5 25 25 H 1.08001 * 126.03979 * 0.02562 * 14 13 3 26 26 H 1.07995 * 126.13279 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9845 -0.8356 5 6 1.6540 2.1118 1.2938 6 1 1.5281 1.5225 2.1901 7 6 1.4616 3.4765 1.3335 8 7 1.4991 4.1784 0.2219 9 14 1.1472 4.3285 2.9659 10 1 2.4412 4.7436 3.5647 11 1 0.2977 5.5260 2.7438 12 1 0.4531 3.3931 3.8868 13 6 3.5406 1.4448 -0.1385 14 6 4.4609 1.3110 0.9062 15 6 5.7044 1.3633 0.3750 16 7 5.5755 1.5251 -0.9585 17 1 6.3017 1.5956 -1.5977 18 7 4.2076 1.5730 -1.2569 19 1 -0.3633 -1.0219 -0.1082 20 1 -0.3634 0.4173 0.9392 21 1 -0.3633 0.6047 -0.8309 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.3641 5.1386 0.2498 25 1 4.2214 1.1877 1.9520 26 1 6.6335 1.2889 0.9205 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260425688.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = 34.854986 kcal Electronic energy + Delta-G solvation = -10667.409323 eV Core-core repulsion = 8746.306018 eV Total energy + Delta-G solvation = -1921.103305 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.67665 -36.77149 -33.78727 -31.97581 -30.53437 -28.61088 -25.71583 -22.37110 -21.95358 -20.22765 -18.87365 -18.06728 -16.44168 -15.37058 -15.22019 -14.94744 -14.23485 -14.11356 -13.82533 -13.13444 -12.82142 -12.77489 -12.21596 -12.00598 -11.77672 -11.41294 -11.24248 -10.89695 -10.49469 -9.85860 -9.29128 -8.07220 -6.16186 1.29923 1.45496 1.46283 1.56359 2.28828 2.38708 2.49243 3.27679 4.24064 4.33923 4.52245 4.65539 4.76451 5.02420 5.17923 5.24944 5.33793 5.43230 5.53599 5.63656 5.78165 5.88966 6.11158 6.35515 6.83762 6.99357 7.19857 7.51144 9.02655 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.033947 B = 0.017733 C = 0.013688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.619282 B = 1578.640153 C = 2045.130415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.096 4.096 3 C 0.098 3.902 4 H 0.022 0.978 5 C -0.499 4.499 6 H 0.064 0.936 7 C 0.014 3.986 8 N -0.926 5.926 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.259 1.259 13 C 0.107 3.893 14 C -0.286 4.286 15 C 0.058 3.942 16 N -0.489 5.489 17 H 0.444 0.556 18 N -0.366 5.366 19 H 0.065 0.935 20 H 0.051 0.949 21 H 0.033 0.967 22 H 0.036 0.964 23 H 0.056 0.944 24 H 0.257 0.743 25 H 0.140 0.860 26 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 -5.788 2.330 8.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.134 4.134 3 C 0.078 3.922 4 H 0.040 0.960 5 C -0.537 4.537 6 H 0.082 0.918 7 C -0.185 4.185 8 N -0.565 5.565 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.183 1.183 13 C -0.059 4.059 14 C -0.316 4.316 15 C -0.089 4.089 16 N -0.198 5.198 17 H 0.289 0.711 18 N -0.190 5.190 19 H 0.084 0.916 20 H 0.070 0.930 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.157 0.843 26 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.886 -5.466 1.011 8.096 hybrid contribution 0.307 0.893 1.084 1.438 sum 6.194 -4.573 2.095 7.979 Atomic orbital electron populations 1.21535 0.95118 1.00438 1.01347 1.21375 0.96579 0.95940 0.99526 1.17433 0.83988 0.93444 0.97369 0.96006 1.21171 1.45232 0.92180 0.95139 0.91816 1.25792 0.94922 0.98642 0.99106 1.70136 1.51189 1.06836 1.28381 0.85646 0.77962 0.78126 0.80517 1.20407 1.21614 1.18252 1.23503 0.99051 0.93423 0.89935 1.21603 0.91939 1.17293 1.00726 1.23063 1.00520 1.00380 0.84985 1.46285 1.06363 1.59820 1.07293 0.71099 1.77189 0.87924 1.29157 1.24742 0.91625 0.92987 0.94733 0.94474 0.92569 0.93377 0.84258 0.76520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 9.63 71.98 0.69 -4.29 15 2 C -0.10 -4.16 5.37 30.59 0.16 -4.00 15 3 C 0.10 5.16 2.29 -12.29 -0.03 5.13 15 4 H 0.02 1.32 7.43 -2.39 -0.02 1.30 15 5 C -0.50 -27.00 6.77 25.60 0.17 -26.83 15 6 H 0.06 3.31 7.82 -2.91 -0.02 3.29 15 7 C 0.01 0.78 5.45 84.65 0.46 1.25 15 8 N -0.93 -56.30 12.87 21.45 0.28 -56.02 15 9 Si 0.95 43.76 29.54 68.60 2.03 45.79 15 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 15 12 H -0.26 -11.18 7.11 99.48 0.71 -10.48 15 13 C 0.11 5.34 6.12 43.10 0.26 5.60 15 14 C -0.29 -12.21 10.02 21.99 0.22 -11.99 15 15 C 0.06 1.90 11.99 83.54 1.00 2.90 15 16 N -0.49 -17.36 7.36 -57.59 -0.42 -17.78 15 17 H 0.44 11.60 8.96 -213.33 -1.91 9.69 15 18 N -0.37 -17.57 12.70 -47.39 -0.60 -18.17 15 19 H 0.06 2.08 8.14 -2.39 -0.02 2.06 15 20 H 0.05 2.11 7.60 -2.38 -0.02 2.09 15 21 H 0.03 1.41 8.14 -2.39 -0.02 1.39 15 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 23 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.26 14.97 8.31 -92.71 -0.77 14.20 15 25 H 0.14 5.75 7.99 -2.91 -0.02 5.72 15 26 H 0.22 4.44 8.06 -2.91 -0.02 4.41 15 Total: -1.00 -68.88 230.17 3.48 -65.39 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -0.75 Total: 13.02 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 2.95 Total: -32.23 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -0.75 Total: -91.97 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.88 3.48 -65.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425688.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.249 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds