Wall clock time and date at job start Mon Mar 30 2020 01:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35503 * 117.00108 * 2 1 4 4 C 1.39688 * 119.91137 * 180.02562 * 3 2 1 5 5 C 1.36988 * 118.26773 * 179.97438 * 4 3 2 6 6 C 1.41166 * 118.02896 * 359.97438 * 5 4 3 7 7 C 1.41245 * 120.21045 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99772 * 353.72195 * 7 6 5 9 9 C 1.39995 * 120.00350 * 173.72816 * 7 6 5 10 10 N 1.30781 * 120.00186 * 6.25789 * 9 7 6 11 11 Si 1.86797 * 120.00136 * 186.25691 * 9 7 6 12 12 H 1.48503 * 109.47251 * 94.98593 * 11 9 7 13 13 H 1.48502 * 109.47147 * 214.98405 * 11 9 7 14 14 H 1.48496 * 109.47446 * 334.98362 * 11 9 7 15 15 N 1.33693 * 119.58793 * 0.02562 * 6 5 4 16 16 N 1.28404 * 121.77932 * 359.97438 * 15 6 5 17 17 H 1.08999 * 109.47032 * 299.99774 * 1 2 3 18 18 H 1.09001 * 109.47297 * 59.99752 * 1 2 3 19 19 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 20 20 H 1.08001 * 120.86748 * 0.26800 * 4 3 2 21 21 H 1.08005 * 120.98621 * 180.02562 * 5 4 3 22 22 H 0.96995 * 120.00747 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4393 1.2783 -0.0005 5 6 4.0259 2.5161 -0.0011 6 6 3.1840 3.6493 -0.0016 7 6 3.7399 4.9477 -0.0016 8 1 4.8071 5.0782 0.1011 9 6 2.9076 6.0655 -0.1345 10 7 1.6083 5.9169 -0.1357 11 14 3.6529 7.7693 -0.3103 12 1 3.7574 8.1178 -1.7501 13 1 2.7880 8.7613 0.3776 14 1 5.0058 7.7835 0.3018 15 7 1.8571 3.4857 -0.0010 16 7 1.3195 2.3197 -0.0005 17 1 -0.3633 0.5138 0.8900 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 4.0397 0.3806 -0.0053 21 1 5.1008 2.6221 -0.0019 22 1 1.0315 6.6913 -0.2282 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260429357.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:20 Heat of formation + Delta-G solvation = -11.271173 kcal Electronic energy + Delta-G solvation = -10268.450551 eV Core-core repulsion = 8209.513971 eV Total energy + Delta-G solvation = -2058.936580 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.12237 -38.79774 -35.63592 -33.55935 -31.96785 -28.42523 -27.59148 -24.45273 -23.63528 -19.77076 -18.93152 -17.95027 -16.86137 -16.73264 -15.74001 -15.12574 -14.57513 -14.49755 -14.19870 -13.05315 -12.86340 -12.81607 -12.65014 -12.19787 -12.03054 -11.49784 -11.22598 -10.69780 -9.67939 -9.63107 -8.46061 -6.61836 0.57479 0.80809 1.43852 1.54969 1.60064 2.22810 2.52326 2.75363 3.64693 4.09567 4.27287 4.36815 4.48677 4.50348 4.64470 4.79960 5.06344 5.19870 5.40037 5.60226 6.22445 6.39466 6.68930 6.76505 8.37421 8.77553 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.089320 B = 0.011825 C = 0.010511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.403417 B = 2367.340488 C = 2663.280284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.328 6.328 3 C 0.109 3.891 4 C -0.118 4.118 5 C -0.168 4.168 6 C 0.131 3.869 7 C -0.448 4.448 8 H 0.108 0.892 9 C 0.016 3.984 10 N -0.764 5.764 11 Si 0.998 3.002 12 H -0.264 1.264 13 H -0.271 1.271 14 H -0.246 1.246 15 N -0.289 5.289 16 N -0.316 5.316 17 H 0.039 0.961 18 H 0.039 0.961 19 H 0.128 0.872 20 H 0.160 0.840 21 H 0.157 0.843 22 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 -2.636 -0.246 3.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.235 6.235 3 C -0.081 4.081 4 C -0.145 4.145 5 C -0.198 4.198 6 C 0.000 4.000 7 C -0.482 4.482 8 H 0.126 0.874 9 C -0.205 4.205 10 N -0.388 5.388 11 Si 0.818 3.182 12 H -0.189 1.189 13 H -0.196 1.196 14 H -0.169 1.169 15 N -0.142 5.142 16 N -0.170 5.170 17 H 0.058 0.942 18 H 0.057 0.943 19 H 0.146 0.854 20 H 0.177 0.823 21 H 0.174 0.826 22 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.369 -2.185 -0.247 2.590 hybrid contribution 1.045 0.052 -0.078 1.049 sum 2.414 -2.132 -0.325 3.237 Atomic orbital electron populations 1.22832 0.77574 1.03811 1.00862 1.85942 1.22829 1.24253 1.90507 1.21459 0.91769 0.86796 1.08043 1.21042 0.91665 0.99596 1.02159 1.22187 1.01571 0.91521 1.04569 1.20569 0.90589 0.95794 0.93081 1.19927 0.96202 0.89138 1.42956 0.87418 1.27178 0.94810 1.05996 0.92566 1.70202 1.05689 1.33617 1.29249 0.84949 0.79474 0.74500 0.79315 1.18886 1.19587 1.16926 1.74176 1.11029 1.08480 1.20477 1.72825 1.34988 0.96005 1.13162 0.94232 0.94265 0.85384 0.82277 0.82552 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 10.39 113.37 1.18 2.73 14 2 O -0.33 -13.94 10.48 -88.05 -0.92 -14.86 14 3 C 0.11 5.35 7.58 84.90 0.64 5.99 14 4 C -0.12 -5.18 10.08 22.33 0.23 -4.95 14 5 C -0.17 -7.73 9.89 22.70 0.22 -7.51 14 6 C 0.13 7.24 6.62 40.32 0.27 7.51 14 7 C -0.45 -23.40 9.15 23.44 0.21 -23.19 14 8 H 0.11 4.97 7.85 -2.91 -0.02 4.95 14 9 C 0.02 0.80 5.49 85.28 0.47 1.26 14 10 N -0.76 -42.19 11.52 21.83 0.25 -41.94 14 11 Si 1.00 36.88 29.56 68.60 2.03 38.91 14 12 H -0.26 -9.48 7.11 99.48 0.71 -8.77 14 13 H -0.27 -9.73 7.11 99.48 0.71 -9.03 14 14 H -0.25 -8.43 7.11 99.48 0.71 -7.72 14 15 N -0.29 -17.42 9.11 -51.93 -0.47 -17.89 14 16 N -0.32 -17.71 10.40 -169.72 -1.76 -19.47 14 17 H 0.04 1.44 8.11 -2.39 -0.02 1.42 14 18 H 0.04 1.43 8.11 -2.39 -0.02 1.41 14 19 H 0.13 3.16 8.14 -2.39 -0.02 3.14 14 20 H 0.16 5.55 8.06 -2.91 -0.02 5.53 14 21 H 0.16 5.91 8.06 -2.91 -0.02 5.89 14 22 H 0.28 14.11 8.29 -92.71 -0.77 13.34 14 Total: -1.00 -66.80 208.21 3.56 -63.24 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.22 Total: 10.16 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 3.22 Total: -18.15 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -1.99 Total: -79.30 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.92 Total: -14.86 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -66.80 3.56 -63.24 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429357.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.970 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds