Wall clock time and date at job start Mon Mar 30 2020 01:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41379 * 126.57933 * 2 1 4 4 C 1.34514 * 106.84247 * 180.23839 * 3 2 1 5 5 O 1.34302 * 108.41684 * 359.76328 * 4 3 2 6 6 C 1.34302 * 109.48128 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.79238 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47356 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47297 * 60.02085 * 7 6 5 10 10 C 1.50697 * 109.46871 * 300.02099 * 7 6 5 11 11 H 1.07997 * 120.00532 * 5.62333 * 10 7 6 12 12 C 1.37880 * 119.99945 * 185.62761 * 10 7 6 13 13 N 1.31511 * 119.99877 * 197.53545 * 12 10 7 14 14 Si 1.86801 * 119.99861 * 17.54066 * 12 10 7 15 15 H 1.48509 * 109.46969 * 179.97438 * 14 12 10 16 16 H 1.48496 * 109.47177 * 299.99896 * 14 12 10 17 17 H 1.48502 * 109.47182 * 59.99915 * 14 12 10 18 18 H 1.09001 * 109.46786 * 270.16525 * 1 2 3 19 19 H 1.09001 * 109.47263 * 30.16667 * 1 2 3 20 20 H 1.08997 * 109.46991 * 150.16883 * 1 2 3 21 21 H 1.08006 * 126.57847 * 359.97438 * 3 2 1 22 22 H 1.07996 * 125.79270 * 179.79564 * 4 3 2 23 23 H 1.09001 * 109.46632 * 186.26775 * 9 7 6 24 24 H 1.09003 * 109.46856 * 306.26647 * 9 7 6 25 25 H 1.08998 * 109.47315 * 66.26713 * 9 7 6 26 26 H 0.97001 * 120.00269 * 354.87162 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6157 0.6811 -0.0054 5 8 3.5847 -0.6616 -0.0033 6 6 2.3086 -1.0802 0.0027 7 6 1.8522 -2.5164 0.0062 8 1 0.7628 -2.5514 0.0106 9 6 2.3902 -3.2196 1.2540 10 6 2.3721 -3.2116 -1.2256 11 1 3.0467 -2.6957 -1.8927 12 6 1.9864 -4.5064 -1.5011 13 7 2.6781 -5.2315 -2.3527 14 14 0.4812 -5.2305 -0.6646 15 1 0.2811 -6.6270 -1.1284 16 1 0.6800 -5.2207 0.8069 17 1 -0.7143 -4.4192 -1.0081 18 1 -0.3633 0.0030 1.0277 19 1 -0.3634 0.8885 -0.5164 20 1 -0.3633 -0.8915 -0.5112 21 1 2.0366 2.1691 -0.0004 22 1 4.5060 1.2923 -0.0099 23 1 2.1551 -4.2826 1.2017 24 1 3.4710 -3.0886 1.3073 25 1 1.9278 -2.7884 2.1419 26 1 3.4144 -4.8332 -2.8428 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436956.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:32 Heat of formation + Delta-G solvation = -3.214605 kcal Electronic energy + Delta-G solvation = -10728.235019 eV Core-core repulsion = 8773.188142 eV Total energy + Delta-G solvation = -1955.046877 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.82538 -34.67889 -33.23584 -31.44604 -28.91561 -26.24281 -24.72397 -21.81331 -20.40299 -18.63859 -17.45694 -16.08668 -15.25726 -14.22252 -13.74351 -13.40916 -12.60681 -12.52112 -12.33131 -11.96969 -11.80911 -11.46347 -11.24812 -10.58036 -10.43686 -9.99012 -9.69063 -9.01594 -8.95900 -8.27526 -7.53711 -6.48260 -4.11415 2.54937 3.26977 3.35804 3.39619 3.56372 3.87142 4.44853 5.21928 5.41579 5.52887 5.70783 5.94212 6.12773 6.25534 6.34603 6.43953 6.50691 6.62482 6.76332 6.90579 7.01372 7.28327 7.33020 7.88002 8.10281 8.35094 8.85844 9.56648 10.89755 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.052375 B = 0.014823 C = 0.013338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.475811 B = 1888.446907 C = 2098.751653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.231 4.231 3 C -0.207 4.207 4 C -0.079 4.079 5 O -0.168 6.168 6 C 0.068 3.932 7 C 0.083 3.917 8 H 0.051 0.949 9 C -0.148 4.148 10 C -0.598 4.598 11 H 0.058 0.942 12 C 0.033 3.967 13 N -0.902 5.902 14 Si 1.043 2.957 15 H -0.283 1.283 16 H -0.272 1.272 17 H -0.281 1.281 18 H 0.055 0.945 19 H 0.055 0.945 20 H 0.066 0.934 21 H 0.136 0.864 22 H 0.190 0.810 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.026 0.974 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 8.357 5.918 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.232 4.232 3 C -0.227 4.227 4 C -0.146 4.146 5 O -0.064 6.064 6 C 0.017 3.983 7 C 0.064 3.936 8 H 0.068 0.932 9 C -0.206 4.206 10 C -0.636 4.636 11 H 0.076 0.924 12 C -0.173 4.173 13 N -0.535 5.535 14 Si 0.870 3.130 15 H -0.209 1.209 16 H -0.198 1.198 17 H -0.207 1.207 18 H 0.074 0.926 19 H 0.074 0.926 20 H 0.085 0.915 21 H 0.154 0.846 22 H 0.207 0.793 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.525 6.763 6.056 9.739 hybrid contribution 0.983 1.847 -0.317 2.116 sum -2.542 8.611 5.739 10.656 Atomic orbital electron populations 1.20046 0.90033 1.01959 1.00935 1.20106 0.96856 0.92142 1.14094 1.21523 0.92923 0.99038 1.09167 1.23722 0.99114 0.81738 1.10017 1.84058 1.29900 1.21625 1.70794 1.23003 0.79672 0.97427 0.98243 1.17916 0.95977 0.83236 0.96443 0.93161 1.22231 1.00857 1.01058 0.96420 1.21867 1.32201 1.01052 1.08459 0.92389 1.25791 1.00654 0.93380 0.97457 1.70845 1.19525 1.36423 1.26712 0.84084 0.75822 0.76555 0.76500 1.20867 1.19778 1.20689 0.92614 0.92611 0.91531 0.84621 0.79296 0.91988 0.93298 0.95443 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 10.02 36.01 0.36 -0.89 15 2 C -0.23 -4.71 6.16 -104.74 -0.65 -5.35 15 3 C -0.21 -3.72 10.87 -39.70 -0.43 -4.15 15 4 C -0.08 -1.42 12.09 29.42 0.36 -1.07 15 5 O -0.17 -3.82 10.65 5.72 0.06 -3.76 15 6 C 0.07 1.58 5.77 -35.63 -0.21 1.37 15 7 C 0.08 2.04 2.23 -92.92 -0.21 1.84 15 8 H 0.05 1.19 5.44 -51.93 -0.28 0.91 15 9 C -0.15 -3.35 8.85 37.16 0.33 -3.02 15 10 C -0.60 -17.19 8.81 -34.44 -0.30 -17.50 15 11 H 0.06 1.84 7.99 -52.49 -0.42 1.42 15 12 C 0.03 0.94 5.29 -17.82 -0.09 0.84 15 13 N -0.90 -27.73 13.70 55.43 0.76 -26.97 15 14 Si 1.04 24.65 26.29 -169.99 -4.47 20.18 15 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 15 16 H -0.27 -5.87 5.76 56.52 0.33 -5.54 15 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 18 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 19 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 20 H 0.07 1.19 7.15 -51.93 -0.37 0.82 15 21 H 0.14 1.98 8.06 -52.48 -0.42 1.56 15 22 H 0.19 2.53 8.06 -52.49 -0.42 2.10 15 23 H 0.06 1.41 4.88 -51.93 -0.25 1.16 15 24 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 26 H 0.27 8.29 8.73 -40.82 -0.36 7.94 15 LS Contribution 223.57 15.07 3.37 3.37 Total: -1.00 -31.08 223.57 -4.21 -35.29 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -3.09 Total: -0.18 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: -0.84 Total: -27.93 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.76 Total: -26.97 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: 0.06 Total: -3.76 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.47 Total: 20.18 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -31.08 -4.21 -35.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436956.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.076 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds