Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41379 * 126.57933 * 2 1 4 4 C 1.34514 * 106.84247 * 180.23839 * 3 2 1 5 5 O 1.34302 * 108.41684 * 359.76328 * 4 3 2 6 6 C 1.34302 * 109.48128 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.79238 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47356 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47297 * 60.02085 * 7 6 5 10 10 C 1.50697 * 109.46871 * 300.02099 * 7 6 5 11 11 H 1.07997 * 120.00532 * 5.62333 * 10 7 6 12 12 C 1.37880 * 119.99945 * 185.62761 * 10 7 6 13 13 N 1.31511 * 119.99877 * 197.53545 * 12 10 7 14 14 Si 1.86801 * 119.99861 * 17.54066 * 12 10 7 15 15 H 1.48509 * 109.46969 * 179.97438 * 14 12 10 16 16 H 1.48496 * 109.47177 * 299.99896 * 14 12 10 17 17 H 1.48502 * 109.47182 * 59.99915 * 14 12 10 18 18 H 1.09001 * 109.46786 * 270.16525 * 1 2 3 19 19 H 1.09001 * 109.47263 * 30.16667 * 1 2 3 20 20 H 1.08997 * 109.46991 * 150.16883 * 1 2 3 21 21 H 1.08006 * 126.57847 * 359.97438 * 3 2 1 22 22 H 1.07996 * 125.79270 * 179.79564 * 4 3 2 23 23 H 1.09001 * 109.46632 * 186.26775 * 9 7 6 24 24 H 1.09003 * 109.46856 * 306.26647 * 9 7 6 25 25 H 1.08998 * 109.47315 * 66.26713 * 9 7 6 26 26 H 0.97001 * 120.00269 * 354.87162 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6157 0.6811 -0.0054 5 8 3.5847 -0.6616 -0.0033 6 6 2.3086 -1.0802 0.0027 7 6 1.8522 -2.5164 0.0062 8 1 0.7628 -2.5514 0.0106 9 6 2.3902 -3.2196 1.2540 10 6 2.3721 -3.2116 -1.2256 11 1 3.0467 -2.6957 -1.8927 12 6 1.9864 -4.5064 -1.5011 13 7 2.6781 -5.2315 -2.3527 14 14 0.4812 -5.2305 -0.6646 15 1 0.2811 -6.6270 -1.1284 16 1 0.6800 -5.2207 0.8069 17 1 -0.7143 -4.4192 -1.0081 18 1 -0.3633 0.0030 1.0277 19 1 -0.3634 0.8885 -0.5164 20 1 -0.3633 -0.8915 -0.5112 21 1 2.0366 2.1691 -0.0004 22 1 4.5060 1.2923 -0.0099 23 1 2.1551 -4.2826 1.2017 24 1 3.4710 -3.0886 1.3073 25 1 1.9278 -2.7884 2.1419 26 1 3.4144 -4.8332 -2.8428 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436956.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = -23.633139 kcal Electronic energy + Delta-G solvation = -10729.120433 eV Core-core repulsion = 8773.188142 eV Total energy + Delta-G solvation = -1955.932292 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.37758 -36.60331 -34.84259 -33.47106 -30.40059 -27.75556 -26.80160 -23.56194 -21.97938 -20.29768 -19.58006 -17.65531 -16.87989 -16.07598 -15.41032 -15.18018 -14.24840 -14.10454 -13.90034 -13.69091 -13.29839 -13.19095 -12.93795 -12.36125 -12.12567 -11.83609 -11.53068 -11.10097 -10.47204 -10.40297 -9.19305 -8.71680 -6.43258 1.00551 1.47272 1.55435 1.73804 1.78817 2.38724 2.48722 3.02638 3.99344 4.12923 4.19414 4.52837 4.67697 4.72569 4.78669 4.86934 4.93961 5.00130 5.20519 5.29693 5.39623 5.55988 5.74666 5.93749 5.99049 6.45294 6.49757 7.35125 8.57475 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.052375 B = 0.014823 C = 0.013338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.475811 B = 1888.446907 C = 2098.751653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.224 4.224 3 C -0.211 4.211 4 C -0.075 4.075 5 O -0.203 6.203 6 C 0.009 3.991 7 C 0.082 3.918 8 H 0.065 0.935 9 C -0.143 4.143 10 C -0.603 4.603 11 H 0.005 0.995 12 C -0.019 4.019 13 N -0.933 5.933 14 Si 1.082 2.918 15 H -0.287 1.287 16 H -0.235 1.235 17 H -0.255 1.255 18 H 0.079 0.921 19 H 0.080 0.920 20 H 0.053 0.947 21 H 0.175 0.825 22 H 0.233 0.767 23 H 0.058 0.942 24 H 0.033 0.967 25 H 0.060 0.940 26 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 9.975 7.679 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.225 4.225 3 C -0.230 4.230 4 C -0.141 4.141 5 O -0.100 6.100 6 C -0.041 4.041 7 C 0.063 3.937 8 H 0.083 0.917 9 C -0.200 4.200 10 C -0.641 4.641 11 H 0.024 0.976 12 C -0.216 4.216 13 N -0.569 5.569 14 Si 0.901 3.099 15 H -0.213 1.213 16 H -0.159 1.159 17 H -0.180 1.180 18 H 0.097 0.903 19 H 0.099 0.901 20 H 0.072 0.928 21 H 0.192 0.808 22 H 0.249 0.751 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.235 8.416 7.825 12.628 hybrid contribution 1.624 1.510 -0.918 2.400 sum -3.611 9.926 6.907 12.621 Atomic orbital electron populations 1.20180 0.87834 1.02582 1.02653 1.20673 0.98582 0.92074 1.11177 1.21967 0.92237 1.00225 1.08578 1.24726 1.01330 0.80311 1.07725 1.84009 1.30217 1.24080 1.71677 1.22873 0.80611 0.97564 1.03040 1.17797 0.96596 0.84528 0.94765 0.91747 1.22123 1.00118 1.00781 0.96984 1.22013 1.31023 1.01439 1.09579 0.97618 1.27433 1.02773 0.94119 0.97303 1.70993 1.20210 1.37060 1.28603 0.83659 0.72646 0.75857 0.77757 1.21264 1.15875 1.17989 0.90258 0.90118 0.92787 0.80799 0.75066 0.92346 0.94824 0.92065 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.34 10.02 71.24 0.71 -1.62 15 2 C -0.22 -8.61 6.16 -19.94 -0.12 -8.73 15 3 C -0.21 -6.87 10.87 22.19 0.24 -6.63 15 4 C -0.07 -2.54 12.09 66.97 0.81 -1.73 15 5 O -0.20 -9.22 10.65 -2.46 -0.03 -9.24 15 6 C 0.01 0.43 5.77 24.83 0.14 0.57 15 7 C 0.08 4.00 2.23 -12.29 -0.03 3.97 15 8 H 0.06 2.93 5.44 -2.39 -0.01 2.92 15 9 C -0.14 -6.28 8.85 71.98 0.64 -5.65 15 10 C -0.60 -35.85 8.81 25.60 0.23 -35.62 15 11 H 0.01 0.37 7.99 -2.91 -0.02 0.34 15 12 C -0.02 -1.10 5.29 84.66 0.45 -0.65 15 13 N -0.93 -59.65 13.70 21.45 0.29 -59.35 15 14 Si 1.08 48.56 26.29 68.60 1.80 50.36 15 15 H -0.29 -13.00 7.11 99.48 0.71 -12.29 15 16 H -0.23 -9.14 5.76 99.48 0.57 -8.57 15 17 H -0.26 -10.37 7.11 99.48 0.71 -9.67 15 18 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 19 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 20 H 0.05 1.79 7.15 -2.39 -0.02 1.77 15 21 H 0.17 4.21 8.06 -2.91 -0.02 4.19 15 22 H 0.23 5.39 8.06 -2.91 -0.02 5.36 15 23 H 0.06 2.56 4.88 -2.39 -0.01 2.55 15 24 H 0.03 1.53 8.14 -2.39 -0.02 1.51 15 25 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 26 H 0.25 16.37 8.73 -92.71 -0.81 15.56 15 Total: -1.00 -70.44 223.57 6.13 -64.31 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.99 Total: 10.01 kcal Atomic # 6 Polarization: -59.16 SS G_CDS: 3.07 Total: -56.09 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.29 Total: -59.35 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.03 Total: -9.24 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.80 Total: 50.36 kcal Total: -70.44 6.13 -64.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436956.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.682 kcal (2) G-P(sol) polarization free energy of solvation -70.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds