Wall clock time and date at job start Mon Mar 30 2020 02:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46891 * 2 1 4 4 N 1.46905 * 109.47052 * 239.99612 * 2 1 3 5 5 C 1.50701 * 109.47031 * 120.00271 * 2 1 3 6 6 N 1.34918 * 126.04199 * 100.14640 * 5 2 1 7 7 H 0.96999 * 124.78460 * 0.03165 * 6 5 2 8 8 C 1.36640 * 110.41941 * 180.27743 * 6 5 2 9 9 C 1.34329 * 109.39353 * 359.74921 * 8 6 5 10 10 C 1.39267 * 126.03446 * 279.99630 * 5 2 1 11 11 C 1.41355 * 127.11185 * 0.02562 * 10 5 2 12 12 H 1.08000 * 119.99435 * 359.70569 * 11 10 5 13 13 C 1.39671 * 120.00054 * 179.70657 * 11 10 5 14 14 N 1.31050 * 120.00194 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00135 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.46885 * 60.00311 * 15 13 11 17 17 H 1.48491 * 109.47480 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47265 * 300.00498 * 15 13 11 19 19 H 1.08996 * 109.47241 * 299.99912 * 1 2 3 20 20 H 1.08999 * 109.47409 * 60.00257 * 1 2 3 21 21 H 1.09001 * 109.47297 * 180.02562 * 1 2 3 22 22 H 1.00897 * 111.00143 * 300.00566 * 4 2 1 23 23 H 1.00901 * 110.99362 * 63.95712 * 4 2 1 24 24 H 1.08000 * 125.30917 * 179.76213 * 8 6 5 25 25 H 1.07998 * 126.75746 * 180.02562 * 9 8 6 26 26 H 0.96998 * 120.00171 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0324 -0.7105 1.2304 6 7 2.4781 -1.9827 1.2861 7 1 2.5245 -2.5864 0.5284 8 6 2.8499 -2.3021 2.5616 9 6 2.6580 -1.2401 3.3614 10 6 2.1211 -0.1688 2.5104 11 6 1.7626 1.1389 2.9099 12 1 1.3760 1.8384 2.1835 13 6 1.9086 1.5263 4.2438 14 7 2.3783 0.6776 5.1250 15 14 1.4355 3.2546 4.7716 16 1 -0.0042 3.4823 4.4873 17 1 1.6843 3.4134 6.2269 18 1 2.2507 4.2423 4.0199 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.6961 -1.6480 -1.2227 23 1 1.7503 -0.1990 -2.0372 24 1 3.2378 -3.2593 2.8775 25 1 2.8591 -1.1843 4.4210 26 1 2.4792 0.9465 6.0515 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451578.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:49 Heat of formation + Delta-G solvation = 10.354426 kcal Electronic energy + Delta-G solvation = -10674.550966 eV Core-core repulsion = 8752.385237 eV Total energy + Delta-G solvation = -1922.165729 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.88910 -36.39117 -35.21849 -31.27356 -29.82540 -28.79364 -26.62104 -23.09163 -20.95884 -20.39358 -18.57608 -17.41434 -16.58968 -16.21320 -15.14489 -14.71892 -14.37720 -13.97213 -13.61085 -13.34329 -13.00628 -12.84098 -12.67926 -12.42242 -12.03990 -11.69039 -11.15518 -11.08499 -9.63407 -8.94624 -8.43892 -8.20515 -5.84322 1.39306 1.42327 1.53335 1.99355 2.37018 2.57673 3.14766 3.69837 3.85832 4.26447 4.51760 4.56205 4.73463 5.00385 5.21313 5.30624 5.45687 5.51763 5.90662 6.07743 6.27856 6.42444 6.67533 6.71863 7.06611 7.34791 7.40869 7.64499 8.76261 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.045105 B = 0.015488 C = 0.012125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.624899 B = 1807.371327 C = 2308.757542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.191 3.809 3 H 0.061 0.939 4 N -0.842 5.842 5 C -0.128 4.128 6 N -0.547 5.547 7 H 0.405 0.595 8 C -0.047 4.047 9 C -0.248 4.248 10 C -0.012 4.012 11 C -0.469 4.469 12 H 0.061 0.939 13 C 0.015 3.985 14 N -0.862 5.862 15 Si 0.975 3.025 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.267 1.267 19 H 0.041 0.959 20 H 0.072 0.928 21 H 0.049 0.951 22 H 0.339 0.661 23 H 0.351 0.649 24 H 0.169 0.831 25 H 0.128 0.872 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 -1.985 -7.591 8.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.078 3.922 3 H 0.079 0.921 4 N -0.373 5.373 5 C -0.238 4.238 6 N -0.145 5.145 7 H 0.241 0.759 8 C -0.177 4.177 9 C -0.277 4.277 10 C -0.019 4.019 11 C -0.503 4.503 12 H 0.079 0.921 13 C -0.192 4.192 14 N -0.493 5.493 15 Si 0.798 3.202 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.191 1.191 19 H 0.061 0.939 20 H 0.090 0.910 21 H 0.068 0.932 22 H 0.152 0.848 23 H 0.165 0.835 24 H 0.186 0.814 25 H 0.146 0.854 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.882 -1.913 -7.198 7.682 hybrid contribution -1.050 0.343 0.191 1.121 sum -2.932 -1.570 -7.008 7.757 Atomic orbital electron populations 1.22452 0.96990 1.01345 1.01661 1.19235 0.91697 0.95594 0.85632 0.92088 1.58801 1.67687 1.06595 1.04200 1.20242 1.20145 0.87691 0.95706 1.40661 1.54211 1.11337 1.08253 0.75891 1.21741 1.10720 1.00366 0.84898 1.22560 1.11308 0.94162 0.99675 1.18686 0.98700 0.93798 0.90741 1.18928 1.40083 0.97247 0.94085 0.92093 1.26513 0.93956 1.02251 0.96472 1.69931 1.39548 1.36597 1.03243 0.85365 0.79250 0.78224 0.77344 1.18982 1.20025 1.19143 0.93933 0.90957 0.93186 0.84820 0.83468 0.81427 0.85419 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.64 9.46 71.98 0.68 -4.96 15 2 C 0.19 7.35 3.54 44.17 0.16 7.51 15 3 H 0.06 2.59 8.09 -2.39 -0.02 2.58 15 4 N -0.84 -24.91 9.03 -171.79 -1.55 -26.46 15 5 C -0.13 -6.09 6.25 42.33 0.26 -5.82 15 6 N -0.55 -22.86 5.77 -180.69 -1.04 -23.90 15 7 H 0.41 13.50 8.03 -92.71 -0.74 12.76 15 8 C -0.05 -2.13 11.85 83.05 0.98 -1.15 15 9 C -0.25 -13.87 9.88 23.67 0.23 -13.63 15 10 C -0.01 -0.71 6.10 -19.97 -0.12 -0.83 15 11 C -0.47 -27.38 9.18 23.38 0.21 -27.17 15 12 H 0.06 3.41 7.72 -2.91 -0.02 3.39 15 13 C 0.02 0.87 5.49 85.16 0.47 1.33 15 14 N -0.86 -49.96 10.42 21.79 0.23 -49.74 15 15 Si 0.98 42.85 29.56 68.60 2.03 44.87 15 16 H -0.27 -11.22 7.11 99.48 0.71 -10.52 15 17 H -0.28 -11.60 7.11 99.48 0.71 -10.89 15 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 19 H 0.04 1.69 8.14 -2.39 -0.02 1.67 15 20 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 21 H 0.05 1.62 8.14 -2.39 -0.02 1.60 15 22 H 0.34 8.76 8.18 -89.70 -0.73 8.03 15 23 H 0.35 8.30 9.07 -89.69 -0.81 7.48 15 24 H 0.17 6.17 8.06 -2.91 -0.02 6.14 15 25 H 0.13 7.62 6.03 -2.91 -0.02 7.60 15 26 H 0.27 14.47 8.30 -92.71 -0.77 13.70 15 Total: -1.00 -66.59 225.73 1.46 -65.13 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -1.08 Total: 34.80 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 2.88 Total: -44.72 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -2.37 Total: -100.09 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -66.59 1.46 -65.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451578.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.483 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds