Wall clock time and date at job start Mon Mar 30 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47260 * 2 1 4 4 H 1.08994 * 109.46979 * 54.59325 * 3 2 1 5 5 C 1.50702 * 109.47131 * 174.59561 * 3 2 1 6 6 H 1.07997 * 119.99662 * 114.47683 * 5 3 2 7 7 C 1.37871 * 119.99835 * 294.75436 * 5 3 2 8 8 N 1.31523 * 120.00305 * 353.04374 * 7 5 3 9 9 Si 1.86800 * 120.00030 * 173.04924 * 7 5 3 10 10 H 1.48504 * 109.47062 * 59.99536 * 9 7 5 11 11 H 1.48500 * 109.47327 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46859 * 299.99907 * 9 7 5 13 13 C 1.50705 * 109.46948 * 294.59630 * 3 2 1 14 14 C 1.34670 * 126.58645 * 324.68394 * 13 3 2 15 15 N 1.34127 * 108.01572 * 179.87467 * 14 13 3 16 16 C 1.30504 * 109.25592 * 0.40102 * 15 14 13 17 17 N 1.35042 * 108.70196 * 359.75253 * 16 15 14 18 18 H 0.96999 * 126.40124 * 179.97438 * 17 16 15 19 19 H 1.09006 * 109.46966 * 65.51966 * 1 2 3 20 20 H 1.08999 * 109.47304 * 185.51561 * 1 2 3 21 21 H 1.09000 * 109.47423 * 305.51732 * 1 2 3 22 22 H 1.09002 * 109.47403 * 239.99479 * 2 1 3 23 23 H 1.09007 * 109.46760 * 119.99833 * 2 1 3 24 24 H 0.97000 * 119.99690 * 180.02562 * 8 7 5 25 25 H 1.07993 * 125.99343 * 0.03321 * 14 13 3 26 26 H 1.08002 * 125.65075 * 179.73148 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 0.8376 5 6 3.5411 1.4446 0.1338 6 1 4.1550 1.8059 -0.6779 7 6 4.1307 0.9798 1.2902 8 7 3.3858 0.6634 2.3269 9 14 5.9876 0.7998 1.3847 10 1 6.6251 2.1227 1.1634 11 1 6.3676 0.2856 2.7250 12 1 6.4464 -0.1515 0.3407 13 6 1.6499 2.1132 -1.2920 14 6 1.5853 1.5375 -2.5077 15 7 1.1969 2.4712 -3.3887 16 6 1.0267 3.6057 -2.7666 17 7 1.2990 3.4260 -1.4562 18 1 1.2546 4.1012 -0.7612 19 1 -0.3633 0.4259 -0.9353 20 1 -0.3634 -1.0229 0.0988 21 1 -0.3634 0.5970 0.8364 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.8007 0.3368 3.1406 25 1 1.8049 0.5044 -2.7331 26 1 0.7194 4.5346 -3.2240 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260500476.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:17 Heat of formation + Delta-G solvation = 37.157583 kcal Electronic energy + Delta-G solvation = -10698.938276 eV Core-core repulsion = 8777.934819 eV Total energy + Delta-G solvation = -1921.003457 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.18501 -35.03497 -31.80889 -31.65253 -28.77926 -26.55482 -23.22876 -21.23187 -20.71344 -19.21839 -17.06507 -16.31168 -14.63796 -14.08635 -13.75071 -13.21086 -12.83019 -12.61814 -12.18040 -11.61678 -11.33172 -10.90049 -10.72088 -10.14495 -9.92629 -9.74926 -9.36639 -9.10946 -9.04602 -8.41888 -7.38098 -6.11131 -4.16347 2.98096 3.27835 3.32655 3.37246 3.95216 3.98238 4.39498 5.20100 5.34646 5.93177 6.19048 6.24052 6.32698 6.45940 6.61058 6.76497 6.90139 7.07062 7.29276 7.57112 7.63468 7.82363 7.88907 8.16437 8.28746 8.83226 8.87454 9.48240 10.95609 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.046373 B = 0.014448 C = 0.012315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.650050 B = 1937.502524 C = 2273.145539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C 0.111 3.889 4 H 0.038 0.962 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.051 3.949 14 C -0.062 4.062 15 N -0.500 5.500 16 C 0.137 3.863 17 N -0.572 5.572 18 H 0.413 0.587 19 H 0.041 0.959 20 H 0.036 0.964 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.081 0.919 24 H 0.263 0.737 25 H 0.159 0.841 26 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 2.936 -2.945 5.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C 0.091 3.909 4 H 0.056 0.944 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.066 4.066 14 C -0.207 4.207 15 N -0.220 5.220 16 C -0.145 4.145 17 N -0.175 5.175 18 H 0.250 0.750 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.177 0.823 26 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.631 2.695 -3.659 5.816 hybrid contribution 1.129 0.434 1.263 1.749 sum -2.501 3.129 -2.396 4.667 Atomic orbital electron populations 1.21847 0.98859 0.99532 1.00274 1.21473 0.92054 0.98740 1.01890 1.17451 0.95862 0.91492 0.86109 0.94383 1.21004 0.90257 1.42887 1.00999 0.92514 1.24944 0.98225 0.95197 0.95308 1.69937 1.35318 1.44192 1.03110 0.86630 0.85466 0.78620 0.77186 1.20352 1.21215 1.20008 1.22365 1.00757 0.83134 1.00366 1.21825 1.10567 0.99417 0.88906 1.70090 1.18311 0.99628 1.33955 1.24553 1.09080 0.99516 0.81347 1.43294 1.53069 1.11000 1.10137 0.75016 0.94019 0.94532 0.93873 0.93898 0.90004 0.92714 0.82328 0.78962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.63 37.16 0.36 -2.53 15 2 C -0.10 -2.34 5.01 -26.73 -0.13 -2.47 15 3 C 0.11 2.66 2.10 -92.92 -0.19 2.46 15 4 H 0.04 0.98 8.11 -51.93 -0.42 0.56 15 5 C -0.51 -13.68 8.47 -34.44 -0.29 -13.97 15 6 H 0.06 1.55 7.75 -52.49 -0.41 1.15 15 7 C 0.07 1.75 5.20 -17.82 -0.09 1.66 15 8 N -0.89 -24.41 12.02 55.43 0.67 -23.75 15 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 15 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 15 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 13 C 0.05 1.10 5.32 -81.60 -0.43 0.66 15 14 C -0.06 -1.33 10.55 -17.81 -0.19 -1.52 15 15 N -0.50 -10.35 11.25 -14.67 -0.17 -10.51 15 16 C 0.14 2.38 13.04 -90.37 -1.18 1.21 15 17 N -0.57 -10.39 6.15 -10.30 -0.06 -10.46 15 18 H 0.41 6.29 8.96 -40.82 -0.37 5.93 15 19 H 0.04 0.80 7.17 -51.93 -0.37 0.43 15 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.04 0.84 8.14 -51.93 -0.42 0.41 15 22 H 0.04 0.95 7.05 -51.93 -0.37 0.58 15 23 H 0.08 2.05 6.67 -51.93 -0.35 1.70 15 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 25 H 0.16 3.33 7.27 -52.49 -0.38 2.95 15 26 H 0.19 2.41 8.06 -52.49 -0.42 1.98 15 LS Contribution 225.24 15.07 3.39 3.39 Total: -1.00 -29.36 225.24 -6.41 -35.77 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.06 Total: 4.21 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -2.16 Total: -14.51 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.44 Total: -44.71 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -29.36 -6.41 -35.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500476.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.926 kcal (2) G-P(sol) polarization free energy of solvation -29.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds