Wall clock time and date at job start Mon Mar 30 2020 01:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 120.00179 * 2 1 4 4 H 1.48496 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46681 * 299.99911 * 3 2 1 6 6 H 1.48494 * 109.46953 * 59.99539 * 3 2 1 7 7 C 1.37874 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.50694 * 109.47652 * 179.97438 * 9 7 2 11 11 C 1.38596 * 120.73943 * 89.99534 * 10 9 7 12 12 N 1.32293 * 119.17638 * 180.02562 * 11 10 9 13 13 C 1.32314 * 120.76202 * 0.02562 * 12 11 10 14 14 O 1.35458 * 119.19781 * 179.97438 * 13 12 11 15 15 N 1.32325 * 121.60913 * 0.25352 * 13 12 11 16 16 C 1.32301 * 120.75652 * 359.48005 * 15 13 12 17 17 H 0.97003 * 119.99761 * 0.02562 * 1 2 3 18 18 H 1.09003 * 109.47315 * 59.99185 * 9 7 2 19 19 H 1.09003 * 109.47108 * 300.00265 * 9 7 2 20 20 H 1.08003 * 120.41291 * 0.02562 * 11 10 9 21 21 H 0.96700 * 114.00348 * 89.99777 * 14 13 12 22 22 H 1.07992 * 120.41398 * 180.23235 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6906 -4.1830 1.1918 12 7 3.5503 -5.1879 1.1557 13 6 3.9704 -5.6780 0.0007 14 8 4.8514 -6.7069 0.0007 15 7 3.5552 -5.1838 -1.1545 16 6 2.6916 -4.1822 -1.1907 17 1 -0.4850 0.8401 -0.0004 18 1 0.6246 -2.5570 -0.8896 19 1 0.6240 -2.5566 0.8903 20 1 2.3518 -3.7871 2.1378 21 1 4.4361 -7.5803 0.0004 22 1 2.3536 -3.7857 -2.1366 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260529068.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:36 Heat of formation + Delta-G solvation = -24.985482 kcal Electronic energy + Delta-G solvation = -10034.108711 eV Core-core repulsion = 7974.577434 eV Total energy + Delta-G solvation = -2059.531277 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.04827 -38.43657 -35.61942 -34.74442 -33.31118 -29.02771 -25.68892 -25.63361 -23.09511 -20.20988 -18.78369 -18.54859 -17.43126 -16.71325 -15.79164 -15.03220 -14.73875 -14.50624 -14.09412 -13.52260 -13.14557 -13.00792 -12.60014 -12.39238 -11.85641 -11.64296 -11.49556 -10.63316 -10.11383 -9.97802 -8.22157 -6.33921 -0.07388 0.06542 1.41159 1.44233 1.55035 2.18361 2.39868 2.74337 3.11188 3.30905 3.78634 4.11838 4.13306 4.46878 4.93724 5.29045 5.40872 5.56087 5.71346 5.87529 6.11854 6.60562 6.77485 6.99526 7.35378 8.87337 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.079943 B = 0.009885 C = 0.009656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.167537 B = 2831.804641 C = 2899.054981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.068 3.932 10 C -0.156 4.156 11 C 0.159 3.841 12 N -0.537 5.537 13 C 0.453 3.547 14 O -0.466 6.466 15 N -0.537 5.537 16 C 0.159 3.841 17 H 0.267 0.733 18 H 0.024 0.976 19 H 0.024 0.976 20 H 0.186 0.814 21 H 0.426 0.574 22 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 -7.510 -0.002 8.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.030 3.970 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.262 5.262 13 C 0.148 3.852 14 O -0.272 6.272 15 N -0.262 5.262 16 C -0.006 4.006 17 H 0.076 0.924 18 H 0.043 0.957 19 H 0.043 0.957 20 H 0.203 0.797 21 H 0.288 0.712 22 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.436 -7.848 -0.001 9.015 hybrid contribution -0.612 1.191 0.000 1.339 sum 3.824 -6.657 -0.001 7.677 Atomic orbital electron populations 1.70039 1.07307 1.27999 1.50737 1.25744 0.95658 1.02564 0.94504 0.85488 0.78778 0.79395 0.77930 1.19541 1.20271 1.20283 1.21325 0.92931 0.91132 1.51666 0.93093 1.17984 0.92146 0.88852 0.98009 1.22167 1.00477 0.98232 0.95173 1.23244 0.89099 0.88653 0.99613 1.67934 1.13256 1.14374 1.30667 1.20383 0.89107 0.91610 0.84087 1.84668 1.30385 1.16775 1.95329 1.67940 1.13278 1.14350 1.30659 1.23244 0.89040 0.88705 0.99612 0.92413 0.95743 0.95738 0.79714 0.71241 0.79714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.36 13.29 21.45 0.28 -51.08 14 2 C 0.01 0.78 5.46 84.65 0.46 1.25 14 3 Si 0.96 42.01 29.54 68.60 2.03 44.04 14 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 14 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 14 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 14 7 C -0.53 -27.78 9.09 25.60 0.23 -27.55 14 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 14 9 C 0.07 3.19 5.15 29.10 0.15 3.34 14 10 C -0.16 -6.18 5.10 -19.70 -0.10 -6.28 14 11 C 0.16 5.82 11.00 84.71 0.93 6.75 14 12 N -0.54 -19.56 10.46 -313.48 -3.28 -22.84 14 13 C 0.45 15.95 8.72 180.57 1.57 17.52 14 14 O -0.47 -13.36 13.64 -87.56 -1.19 -14.56 14 15 N -0.54 -19.57 10.46 -313.47 -3.28 -22.85 14 16 C 0.16 5.82 11.00 84.71 0.93 6.75 14 17 H 0.27 14.02 8.31 -92.71 -0.77 13.25 14 18 H 0.02 1.18 8.10 -2.39 -0.02 1.16 14 19 H 0.02 1.19 8.10 -2.39 -0.02 1.17 14 20 H 0.19 6.02 8.06 -2.91 -0.02 6.00 14 21 H 0.43 7.08 9.06 -74.06 -0.67 6.41 14 22 H 0.19 6.02 8.06 -2.91 -0.02 6.00 14 Total: -1.00 -61.49 211.66 -0.69 -62.18 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 0.57 Total: 3.32 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 4.18 Total: 1.78 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -6.27 Total: -96.77 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.19 Total: -14.56 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -61.49 -0.69 -62.18 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529068.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.197 kcal (2) G-P(sol) polarization free energy of solvation -61.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds