Wall clock time and date at job start Mon Mar 30 2020 01:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34510 * 126.57818 * 2 1 4 4 O 1.34306 * 108.42253 * 179.97438 * 3 2 1 5 5 C 1.34306 * 109.47108 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.78489 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.46755 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47536 * 59.97709 * 6 5 4 9 9 C 1.50701 * 109.47243 * 299.97423 * 6 5 4 10 10 H 1.07994 * 119.99958 * 359.97438 * 9 6 5 11 11 C 1.37876 * 120.00058 * 180.02562 * 9 6 5 12 12 N 1.31516 * 120.00110 * 359.97438 * 11 9 6 13 13 Si 1.86797 * 120.00010 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47700 * 89.99395 * 13 11 9 15 15 H 1.48504 * 109.47163 * 209.99434 * 13 11 9 16 16 H 1.48502 * 109.46955 * 329.98860 * 13 11 9 17 17 C 1.34511 * 108.42179 * 359.72181 * 5 4 3 18 18 H 1.09001 * 109.46953 * 90.02546 * 1 2 3 19 19 H 1.09000 * 109.47318 * 210.02144 * 1 2 3 20 20 H 1.09000 * 109.47161 * 330.02775 * 1 2 3 21 21 H 1.07998 * 125.79311 * 359.95982 * 3 2 1 22 22 H 1.09004 * 109.46480 * 300.00032 * 8 6 5 23 23 H 1.08999 * 109.47237 * 59.99365 * 8 6 5 24 24 H 1.08998 * 109.47553 * 179.97438 * 8 6 5 25 25 H 0.96995 * 120.00025 * 180.02562 * 12 11 9 26 26 H 1.08005 * 126.57585 * 180.26538 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5848 0.6617 0.0006 5 6 3.6157 -0.6810 0.0015 6 6 4.8581 -1.5339 0.0029 7 1 4.5759 -2.5869 0.0039 8 6 5.6863 -1.2268 1.2522 9 6 5.6748 -1.2339 -1.2275 10 1 5.3286 -0.4994 -1.9395 11 6 6.8635 -1.8978 -1.4448 12 7 7.2848 -2.7927 -0.5780 13 14 7.8762 -1.5254 -2.9696 14 1 8.8308 -0.4270 -2.6738 15 1 8.6291 -2.7403 -3.3727 16 1 6.9738 -1.1129 -4.0745 17 6 2.3496 -1.1353 0.0077 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3634 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5134 21 1 1.9816 2.1094 -0.0006 22 1 5.9683 -0.1739 1.2512 23 1 5.0956 -1.4437 2.1422 24 1 6.5847 -1.8440 1.2535 25 1 8.1212 -3.2595 -0.7306 26 1 2.0367 -2.1690 0.0140 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260557407.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:34 Heat of formation + Delta-G solvation = -21.917833 kcal Electronic energy + Delta-G solvation = -10512.825349 eV Core-core repulsion = 8556.967438 eV Total energy + Delta-G solvation = -1955.857910 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.30618 -36.43868 -34.82076 -33.19213 -29.99923 -27.65607 -27.29056 -23.75208 -22.00286 -20.20956 -18.37414 -17.77302 -16.72347 -16.59828 -15.10700 -14.93067 -14.28364 -13.90021 -13.85938 -13.44329 -13.27059 -12.92558 -12.82571 -12.61558 -12.27614 -12.17379 -11.62355 -11.18012 -10.56515 -10.31619 -9.06323 -8.16880 -6.33008 1.05453 1.40932 1.41467 1.52462 1.82375 2.40764 2.43204 3.10413 4.05445 4.16466 4.29902 4.66231 4.73154 4.90494 4.91764 5.00749 5.09652 5.12361 5.25243 5.39854 5.53461 5.67224 5.87355 5.93526 6.17816 6.53007 6.71720 7.35147 8.87424 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.064849 B = 0.011342 C = 0.010681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.670446 B = 2468.136941 C = 2620.965400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.188 4.188 3 C -0.080 4.080 4 O -0.194 6.194 5 C 0.023 3.977 6 C 0.105 3.895 7 H 0.037 0.963 8 C -0.124 4.124 9 C -0.537 4.537 10 H 0.045 0.955 11 C 0.019 3.981 12 N -0.912 5.912 13 Si 0.962 3.038 14 H -0.273 1.273 15 H -0.275 1.275 16 H -0.272 1.272 17 C -0.257 4.257 18 H 0.072 0.928 19 H 0.068 0.932 20 H 0.084 0.916 21 H 0.233 0.767 22 H 0.026 0.974 23 H 0.031 0.969 24 H 0.071 0.929 25 H 0.267 0.733 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.980 5.016 0.857 10.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.189 4.189 3 C -0.146 4.146 4 O -0.091 6.091 5 C -0.028 4.028 6 C 0.087 3.913 7 H 0.055 0.945 8 C -0.182 4.182 9 C -0.574 4.574 10 H 0.063 0.937 11 C -0.180 4.180 12 N -0.551 5.551 13 Si 0.787 3.213 14 H -0.198 1.198 15 H -0.201 1.201 16 H -0.197 1.197 17 C -0.276 4.276 18 H 0.091 0.909 19 H 0.087 0.913 20 H 0.103 0.897 21 H 0.249 0.751 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.590 5.068 0.895 10.014 hybrid contribution 0.601 -0.166 -0.684 0.925 sum -7.989 4.903 0.210 9.376 Atomic orbital electron populations 1.20185 0.86735 1.03425 1.02645 1.20838 0.98737 0.91876 1.07494 1.24514 0.79814 1.01117 1.09184 1.84011 1.30616 1.22873 1.71569 1.23322 0.98155 0.80562 1.00746 1.17459 0.86744 0.91634 0.95457 0.94537 1.21625 1.01287 0.99786 0.95482 1.21246 1.06401 1.23223 1.06579 0.93666 1.25705 0.98178 0.94440 0.99687 1.69970 1.22478 1.25969 1.36693 0.85498 0.78521 0.77978 0.79341 1.19831 1.20055 1.19723 1.21656 0.92008 1.00478 1.13491 0.90892 0.91335 0.89733 0.75061 0.95435 0.95027 0.91065 0.92381 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.72 10.40 71.24 0.74 -0.98 15 2 C -0.19 -6.44 6.16 -19.94 -0.12 -6.56 15 3 C -0.08 -2.77 12.01 66.97 0.80 -1.97 15 4 O -0.19 -8.78 10.65 -2.54 -0.03 -8.81 15 5 C 0.02 1.09 5.76 24.83 0.14 1.23 15 6 C 0.11 5.65 2.71 -12.28 -0.03 5.62 15 7 H 0.04 2.06 8.10 -2.38 -0.02 2.04 15 8 C -0.12 -6.32 8.95 71.98 0.64 -5.67 15 9 C -0.54 -30.99 8.55 25.60 0.22 -30.78 15 10 H 0.04 2.66 7.74 -2.91 -0.02 2.63 15 11 C 0.02 1.09 5.30 84.65 0.45 1.54 15 12 N -0.91 -52.34 11.32 21.45 0.24 -52.09 15 13 Si 0.96 44.11 29.54 68.60 2.03 46.14 15 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 17 C -0.26 -10.74 10.74 22.19 0.24 -10.50 15 18 H 0.07 1.56 8.14 -2.39 -0.02 1.54 15 19 H 0.07 1.51 8.14 -2.39 -0.02 1.49 15 20 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.23 5.49 8.06 -2.91 -0.02 5.46 15 22 H 0.03 1.36 8.14 -2.38 -0.02 1.34 15 23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 15 24 H 0.07 3.88 6.07 -2.39 -0.01 3.86 15 25 H 0.27 14.39 8.31 -92.71 -0.77 13.62 15 26 H 0.14 5.59 8.06 -2.91 -0.02 5.56 15 Total: -1.00 -63.34 230.46 6.47 -56.87 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.15 Total: 5.96 kcal Atomic # 6 Polarization: -51.15 SS G_CDS: 3.08 Total: -48.07 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.24 Total: -52.09 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.03 Total: -8.81 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -63.34 6.47 -56.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260557407.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.948 kcal (2) G-P(sol) polarization free energy of solvation -63.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds