Wall clock time and date at job start Mon Mar 30 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.36525 * 125.64118 * 2 1 4 4 H 0.97005 * 125.68715 * 0.02562 * 3 2 1 5 5 C 1.38018 * 108.62292 * 180.16549 * 3 2 1 6 6 C 1.39906 * 126.16717 * 179.82820 * 5 3 2 7 7 H 1.08003 * 120.00336 * 199.67760 * 6 5 3 8 8 C 1.40018 * 119.99955 * 19.68171 * 6 5 3 9 9 N 1.30889 * 119.99801 * 167.48833 * 8 6 5 10 10 Si 1.86797 * 119.99629 * 347.48538 * 8 6 5 11 11 H 1.48499 * 109.46949 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47547 * 300.00048 * 10 8 6 13 13 H 1.48500 * 109.47025 * 60.00508 * 10 8 6 14 14 C 1.39660 * 107.66738 * 359.57249 * 5 3 2 15 15 C 1.50707 * 126.40578 * 180.26288 * 14 5 3 16 16 C 1.37658 * 125.64673 * 179.68719 * 2 1 3 17 17 N 1.40381 * 126.09329 * 0.02576 * 16 2 1 18 18 H 1.08996 * 109.47347 * 270.30921 * 1 2 3 19 19 H 1.08998 * 109.47383 * 30.31510 * 1 2 3 20 20 H 1.09007 * 109.47352 * 150.30992 * 1 2 3 21 21 H 0.97000 * 120.00363 * 354.41159 * 9 8 6 22 22 H 1.08994 * 109.46846 * 89.99653 * 15 14 5 23 23 H 1.09001 * 109.46969 * 209.99509 * 15 14 5 24 24 H 1.09001 * 109.46966 * 329.99804 * 15 14 5 25 25 H 0.96997 * 119.99718 * 179.97438 * 17 16 2 26 26 H 0.97000 * 120.00152 * 359.96823 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3025 1.1095 0.0000 4 1 1.9919 2.0285 0.0004 5 6 3.6222 0.7056 -0.0038 6 6 4.7423 1.5439 -0.0084 7 1 5.7014 1.1621 -0.3260 8 6 4.6199 2.8780 0.3988 9 7 5.6918 3.5925 0.6303 10 14 2.9268 3.6378 0.6117 11 1 3.0694 5.0505 1.0467 12 1 2.1961 3.5886 -0.6801 13 1 2.1689 2.8784 1.6384 14 6 3.6381 -0.6909 0.0038 15 6 4.8611 -1.5715 0.0086 16 6 2.3092 -1.1186 0.0061 17 7 1.8694 -2.4517 0.0129 18 1 -0.3634 0.0055 1.0276 19 1 -0.3634 0.8871 -0.5187 20 1 -0.3634 -0.8928 -0.5090 21 1 6.5678 3.1771 0.5988 22 1 5.1559 -1.7782 1.0374 23 1 4.6359 -2.5089 -0.5001 24 1 5.6760 -1.0644 -0.5080 25 1 2.5151 -3.1755 0.0165 26 1 0.9197 -2.6491 0.0140 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260625021.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:31 Heat of formation + Delta-G solvation = 6.593609 kcal Electronic energy + Delta-G solvation = -10751.555527 eV Core-core repulsion = 8829.226717 eV Total energy + Delta-G solvation = -1922.328810 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.27957 -35.84474 -34.76531 -33.05236 -30.57469 -28.84910 -27.67404 -23.75675 -21.37159 -20.16106 -19.57915 -17.89472 -16.44282 -16.07803 -15.36439 -15.03552 -14.81576 -13.90967 -13.75012 -13.50147 -13.31653 -13.16780 -12.56520 -12.50876 -11.97490 -11.67403 -11.51724 -11.29363 -11.16175 -9.34070 -8.78436 -7.78736 -6.22269 1.10087 1.18046 1.44224 1.77304 2.08694 2.46318 2.80039 3.18607 3.66365 4.55244 4.57432 4.75063 4.92573 4.95087 5.06158 5.13269 5.29017 5.45237 5.54134 5.62388 5.88812 6.06182 6.52573 6.60731 6.99733 7.20021 7.36022 7.60117 8.07397 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.045156 B = 0.018724 C = 0.013450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.927448 B = 1495.010551 C = 2081.336137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.182 4.182 3 N -0.598 5.598 4 H 0.387 0.613 5 C 0.207 3.793 6 C -0.538 4.538 7 H 0.060 0.940 8 C -0.001 4.001 9 N -0.859 5.859 10 Si 1.079 2.921 11 H -0.263 1.263 12 H -0.252 1.252 13 H -0.258 1.258 14 C -0.361 4.361 15 C -0.031 4.031 16 C 0.154 3.846 17 N -0.868 5.868 18 H 0.054 0.946 19 H 0.054 0.946 20 H 0.079 0.921 21 H 0.276 0.724 22 H 0.032 0.968 23 H 0.058 0.942 24 H 0.027 0.973 25 H 0.395 0.605 26 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.162 -5.600 -0.455 10.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.289 4.289 3 N -0.213 5.213 4 H 0.231 0.769 5 C 0.093 3.907 6 C -0.574 4.574 7 H 0.078 0.922 8 C -0.213 4.213 9 N -0.486 5.486 10 Si 0.902 3.098 11 H -0.188 1.188 12 H -0.179 1.179 13 H -0.184 1.184 14 C -0.369 4.369 15 C -0.089 4.089 16 C 0.048 3.952 17 N -0.415 5.415 18 H 0.073 0.927 19 H 0.073 0.927 20 H 0.098 0.902 21 H 0.087 0.913 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.046 0.954 25 H 0.223 0.777 26 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.921 -3.981 -0.106 10.691 hybrid contribution 1.411 -1.220 -0.400 1.907 sum -8.510 -5.201 -0.506 9.987 Atomic orbital electron populations 1.19885 0.87221 1.02307 1.01125 1.20017 0.93339 0.84941 1.30646 1.42589 1.05744 1.06622 1.66332 0.76927 1.17982 0.82716 0.92976 0.97053 1.19610 0.95190 0.97595 1.45034 0.92168 1.28051 1.08003 0.94322 0.90891 1.70593 1.00263 1.39764 1.37993 0.83654 0.70309 0.76934 0.78901 1.18829 1.17852 1.18399 1.19385 0.93879 0.92001 1.31620 1.19512 0.93881 0.96642 0.98833 1.16761 0.91196 0.85022 1.02205 1.41331 1.08845 1.01800 1.89496 0.92701 0.92713 0.90250 0.91350 0.94877 0.92349 0.95365 0.77711 0.77497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.52 10.24 71.23 0.73 -0.79 15 2 C -0.18 -7.89 7.23 41.69 0.30 -7.59 15 3 N -0.60 -29.10 4.96 -173.69 -0.86 -29.96 15 4 H 0.39 17.46 3.11 -92.70 -0.29 17.17 15 5 C 0.21 11.22 6.40 38.92 0.25 11.47 15 6 C -0.54 -31.24 9.44 23.11 0.22 -31.02 15 7 H 0.06 3.70 7.49 -2.91 -0.02 3.67 15 8 C 0.00 -0.08 5.52 85.26 0.47 0.39 15 9 N -0.86 -49.11 13.66 21.85 0.30 -48.81 15 10 Si 1.08 47.26 24.94 68.60 1.71 48.97 15 11 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 12 H -0.25 -10.02 6.75 99.48 0.67 -9.35 15 13 H -0.26 -10.92 6.86 99.48 0.68 -10.23 15 14 C -0.36 -17.98 6.25 -19.19 -0.12 -18.10 15 15 C -0.03 -1.36 10.04 71.24 0.72 -0.65 15 16 C 0.15 6.73 7.21 37.96 0.27 7.01 15 17 N -0.87 -28.24 9.17 -51.25 -0.47 -28.71 15 18 H 0.05 1.60 8.14 -2.39 -0.02 1.58 15 19 H 0.05 1.60 8.14 -2.39 -0.02 1.58 15 20 H 0.08 2.10 7.60 -2.38 -0.02 2.09 15 21 H 0.28 15.73 8.73 -92.71 -0.81 14.92 15 22 H 0.03 1.38 8.14 -2.39 -0.02 1.36 15 23 H 0.06 2.14 7.73 -2.39 -0.02 2.12 15 24 H 0.03 1.27 7.50 -2.39 -0.02 1.25 15 25 H 0.40 11.51 8.39 -92.71 -0.78 10.73 15 26 H 0.40 10.50 8.21 -92.71 -0.76 9.74 15 Total: -1.00 -64.16 218.95 2.81 -61.36 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.71 Total: 36.43 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 2.84 Total: -39.28 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -1.03 Total: -107.48 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.71 Total: 48.97 kcal Total: -64.16 2.81 -61.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260625021.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.951 kcal (2) G-P(sol) polarization free energy of solvation -64.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds