Wall clock time and date at job start Mon Mar 30 2020 02:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30496 * 125.65132 * 2 1 4 4 C 1.34123 * 109.25969 * 179.89571 * 3 2 1 5 5 C 1.50695 * 125.99354 * 180.11364 * 4 3 2 6 6 C 1.34670 * 108.01732 * 0.36577 * 4 3 2 7 7 C 1.50704 * 126.59352 * 179.74311 * 6 4 3 8 8 C 1.50699 * 109.46911 * 85.01690 * 7 6 4 9 9 H 1.08005 * 119.99877 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00281 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99320 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 120.00323 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47317 * 59.99598 * 12 10 8 14 14 H 1.48503 * 109.47328 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.46989 * 299.99814 * 12 10 8 16 16 N 1.35045 * 125.64697 * 180.30653 * 2 1 3 17 17 H 0.96993 * 126.40042 * 359.94651 * 16 2 1 18 18 H 1.09002 * 109.47152 * 269.69281 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.69382 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.69363 * 1 2 3 21 21 H 1.08997 * 109.47487 * 270.29535 * 5 4 3 22 22 H 1.08996 * 109.47174 * 30.29970 * 5 4 3 23 23 H 1.09004 * 109.47459 * 150.29487 * 5 4 3 24 24 H 1.08999 * 109.47605 * 205.02321 * 7 6 4 25 25 H 1.09003 * 109.46696 * 325.02551 * 7 6 4 26 26 H 0.97001 * 119.99451 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 0.0023 5 6 4.7480 1.6017 0.0055 6 6 3.5926 -0.6643 -0.0044 7 6 4.8276 -1.5279 -0.0101 8 6 5.3116 -1.7216 1.4038 9 1 4.7780 -1.2653 2.2245 10 6 6.4356 -2.4814 1.6498 11 7 7.0856 -3.0365 0.6503 12 14 7.0352 -2.7221 3.4024 13 1 5.9732 -3.3832 4.2025 14 1 8.2529 -3.5720 3.3967 15 1 7.3566 -1.4017 4.0013 16 7 2.2941 -1.0974 -0.0059 17 1 1.9951 -2.0201 -0.0101 18 1 -0.3633 -0.0055 1.0277 19 1 -0.3633 -0.8872 -0.5186 20 1 -0.3633 0.8928 -0.5091 21 1 5.0348 1.8285 -1.0213 22 1 4.4933 2.5258 0.5242 23 1 5.5797 1.1160 0.5161 24 1 4.5912 -2.4971 -0.4493 25 1 5.6072 -1.0431 -0.5978 26 1 7.8761 -3.5713 0.8233 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260635186.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:38 Heat of formation + Delta-G solvation = 10.186984 kcal Electronic energy + Delta-G solvation = -10436.526993 eV Core-core repulsion = 8514.354004 eV Total energy + Delta-G solvation = -1922.172990 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.89188 -35.60778 -34.06356 -33.33670 -30.55416 -29.59840 -26.47984 -24.10097 -21.74104 -20.47634 -18.57465 -17.92801 -16.53107 -16.22540 -15.05131 -14.48939 -14.31118 -13.89586 -13.64904 -13.42583 -13.20705 -13.10731 -12.85193 -12.66975 -12.59920 -11.97172 -11.61892 -10.85415 -10.63591 -10.58529 -8.86551 -8.20181 -6.36021 1.26521 1.40911 1.42339 1.51068 2.18667 2.36756 2.43247 3.08732 3.64131 4.24981 4.46133 4.59269 4.67293 4.79798 4.87400 4.93096 5.07862 5.18464 5.25590 5.33360 5.69034 5.71398 5.95662 6.13872 6.71404 6.74758 7.25638 7.33582 8.85961 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.055765 B = 0.011254 C = 0.010712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.990726 B = 2487.468621 C = 2613.321935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.185 3.815 3 N -0.522 5.522 4 C -0.045 4.045 5 C -0.054 4.054 6 C 0.005 3.995 7 C 0.099 3.901 8 C -0.530 4.530 9 H 0.048 0.952 10 C 0.013 3.987 11 N -0.925 5.925 12 Si 0.963 3.037 13 H -0.270 1.270 14 H -0.278 1.278 15 H -0.270 1.270 16 N -0.562 5.562 17 H 0.425 0.575 18 H 0.090 0.910 19 H 0.096 0.904 20 H 0.094 0.906 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.007 0.993 25 H 0.023 0.977 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.412 2.792 -0.243 9.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 N -0.245 5.245 4 C -0.171 4.171 5 C -0.112 4.112 6 C -0.111 4.111 7 C 0.061 3.939 8 C -0.568 4.568 9 H 0.066 0.934 10 C -0.186 4.186 11 N -0.564 5.564 12 Si 0.788 3.212 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.195 1.195 16 N -0.168 5.168 17 H 0.264 0.736 18 H 0.108 0.892 19 H 0.115 0.885 20 H 0.113 0.887 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.026 0.974 25 H 0.041 0.959 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.517 3.544 -0.296 10.160 hybrid contribution 0.815 -1.564 0.685 1.892 sum -8.702 1.980 0.389 8.933 Atomic orbital electron populations 1.20289 0.81406 1.05205 1.04508 1.24044 0.97143 0.81231 1.05441 1.69975 1.01888 1.30195 1.22429 1.20707 0.93490 0.92009 1.10890 1.19901 0.92539 0.96926 1.01859 1.21717 0.86471 0.95726 1.07207 1.17476 0.87539 0.92089 0.96767 1.21224 1.11400 1.31638 0.92515 0.93394 1.25817 0.96364 0.94955 1.01512 1.70045 1.19479 1.33937 1.32967 0.85529 0.77808 0.78434 0.79470 1.19533 1.20345 1.19483 1.43060 1.05807 1.10440 1.57450 0.73558 0.89162 0.88487 0.88728 0.91377 0.91167 0.92141 0.97448 0.95893 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.19 10.51 71.24 0.75 -0.45 15 2 C 0.19 6.46 8.15 138.13 1.13 7.58 15 3 N -0.52 -21.87 11.25 -176.29 -1.98 -23.86 15 4 C -0.04 -2.01 7.09 41.39 0.29 -1.71 15 5 C -0.05 -2.18 10.13 71.23 0.72 -1.46 15 6 C 0.00 0.22 6.43 40.95 0.26 0.49 15 7 C 0.10 5.24 5.09 29.10 0.15 5.38 15 8 C -0.53 -29.77 9.09 25.60 0.23 -29.54 15 9 H 0.05 2.72 7.74 -2.91 -0.02 2.70 15 10 C 0.01 0.70 5.46 84.66 0.46 1.16 15 11 N -0.92 -54.02 13.29 21.45 0.28 -53.74 15 12 Si 0.96 43.55 29.54 68.60 2.03 45.58 15 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 14 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 16 N -0.56 -21.11 6.15 -174.59 -1.07 -22.18 15 17 H 0.43 13.22 8.96 -92.71 -0.83 12.39 15 18 H 0.09 1.69 8.14 -2.39 -0.02 1.67 15 19 H 0.10 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.09 1.86 8.14 -2.38 -0.02 1.84 15 21 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 22 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.06 2.60 7.89 -2.39 -0.02 2.58 15 24 H 0.01 0.40 8.14 -2.39 -0.02 0.38 15 25 H 0.02 1.28 8.03 -2.39 -0.02 1.26 15 26 H 0.27 14.68 8.31 -92.71 -0.77 13.91 15 Total: -1.00 -66.92 233.29 3.59 -63.32 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.34 Total: 9.41 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 4.00 Total: -18.54 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -2.77 Total: -99.77 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -66.92 3.59 -63.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635186.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.512 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds