Wall clock time and date at job start Mon Mar 30 2020 02:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 C 1.40137 * 125.79894 * 84.72158 * 4 2 1 6 6 C 1.35243 * 107.98352 * 179.82669 * 5 4 2 7 7 N 1.36281 * 107.58371 * 0.42612 * 6 5 4 8 8 C 1.37396 * 126.11641 * 179.70861 * 7 6 5 9 9 H 1.08000 * 119.99835 * 359.97438 * 8 7 6 10 10 C 1.38994 * 119.99923 * 179.97438 * 8 7 6 11 11 N 1.31286 * 119.99819 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47028 * 89.99764 * 12 10 8 14 14 H 1.48497 * 109.47425 * 210.00323 * 12 10 8 15 15 H 1.48506 * 109.47301 * 330.00655 * 12 10 8 16 16 N 1.30938 * 125.80142 * 265.02404 * 4 2 1 17 17 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 18 18 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 19 19 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 21 21 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 22 22 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 24 24 H 1.07995 * 126.00429 * 359.97438 * 5 4 2 25 25 H 1.07998 * 126.20643 * 180.15571 * 6 5 4 26 26 H 0.97002 * 119.99824 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.2069 -0.1341 -2.4958 6 6 2.6757 -1.0906 -3.3292 7 7 2.7852 -2.2441 -2.6118 8 6 3.2203 -3.4566 -3.0895 9 1 3.5139 -3.5556 -4.1241 10 6 3.2825 -4.5559 -2.2412 11 7 2.9251 -4.4357 -0.9836 12 14 3.8733 -6.2046 -2.8907 13 1 5.3454 -6.3043 -2.7224 14 1 3.2134 -7.2996 -2.1353 15 1 3.5310 -6.3207 -4.3311 16 7 2.3745 -1.9724 -1.3003 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 1.8933 -0.5139 0.8900 21 1 1.6768 1.9562 0.8900 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 2.0052 0.8938 -2.7586 25 1 2.9151 -0.9643 -4.3747 26 1 2.9689 -5.2028 -0.3915 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260717278.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:45 Heat of formation + Delta-G solvation = 61.151138 kcal Electronic energy + Delta-G solvation = -10581.773936 eV Core-core repulsion = 8661.810918 eV Total energy + Delta-G solvation = -1919.963018 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.37202 -34.89732 -33.03821 -29.73852 -28.25358 -26.48347 -24.79674 -21.71699 -19.81707 -18.10930 -17.25760 -15.26469 -14.50441 -13.99026 -13.38297 -13.19014 -12.52039 -12.27677 -11.79211 -11.63920 -11.32033 -11.16889 -11.02762 -10.53276 -10.44842 -10.28106 -10.05047 -9.27541 -8.56020 -7.83334 -7.14268 -6.46965 -4.16922 3.01465 3.09508 3.13798 3.73594 3.90221 4.30967 4.80659 5.11272 5.66181 5.71443 5.93106 6.17162 6.26858 6.38112 6.45353 6.53269 6.60825 6.85444 6.95671 6.97254 7.19864 7.32585 7.64405 8.01943 8.33567 8.80062 9.53210 9.80251 10.49947 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.072859 B = 0.011874 C = 0.010816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.210947 B = 2357.445027 C = 2588.242718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.000 4.000 3 C -0.134 4.134 4 C -0.020 4.020 5 C -0.299 4.299 6 C -0.061 4.061 7 N -0.156 5.156 8 C -0.330 4.330 9 H 0.114 0.886 10 C 0.047 3.953 11 N -0.777 5.777 12 Si 0.932 3.068 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.265 1.265 16 N -0.258 5.258 17 H 0.051 0.949 18 H 0.045 0.955 19 H 0.053 0.947 20 H 0.068 0.932 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.112 0.888 25 H 0.140 0.860 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 3.965 -0.158 4.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 C -0.192 4.192 4 C -0.175 4.175 5 C -0.332 4.332 6 C -0.210 4.210 7 N 0.077 4.923 8 C -0.462 4.462 9 H 0.131 0.869 10 C -0.169 4.169 11 N -0.405 5.405 12 Si 0.756 3.244 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.189 1.189 16 N -0.089 5.089 17 H 0.070 0.930 18 H 0.064 0.936 19 H 0.072 0.928 20 H 0.087 0.913 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.130 0.870 25 H 0.158 0.842 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.142 2.686 0.671 2.994 hybrid contribution 0.242 -0.014 -0.914 0.946 sum -0.900 2.671 -0.244 2.829 Atomic orbital electron populations 1.21755 0.95574 1.01564 1.00364 1.19112 0.94414 0.94014 0.94465 1.21742 1.00920 0.95945 1.00596 1.21896 1.07028 0.93708 0.94914 1.20532 1.19580 0.99038 0.94002 1.22029 1.13047 0.87947 0.97993 1.44850 1.35921 1.06138 1.05419 1.19857 1.45257 0.83963 0.97110 0.86886 1.25592 0.96018 1.00228 0.95072 1.70217 1.35708 1.30815 1.03718 0.85880 0.79060 0.80207 0.79281 1.19689 1.20181 1.18904 1.78097 1.21262 1.12988 0.96560 0.93035 0.93557 0.92807 0.91337 0.93517 0.92979 0.92742 0.87002 0.84203 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.18 37.16 0.34 -2.06 15 2 C 0.00 0.01 3.38 -91.78 -0.31 -0.30 15 3 C -0.13 -2.24 8.79 37.15 0.33 -1.91 15 4 C -0.02 -0.50 6.13 -82.26 -0.50 -1.00 15 5 C -0.30 -7.21 9.98 -39.94 -0.40 -7.60 15 6 C -0.06 -1.55 11.47 -16.64 -0.19 -1.74 15 7 N -0.16 -4.48 3.73 -11.54 -0.04 -4.52 15 8 C -0.33 -9.16 10.26 -14.78 -0.15 -9.31 15 9 H 0.11 2.83 7.83 -52.49 -0.41 2.42 15 10 C 0.05 1.25 5.50 -17.50 -0.10 1.16 15 11 N -0.78 -22.28 11.82 55.50 0.66 -21.62 15 12 Si 0.93 19.61 29.55 -169.99 -5.02 14.58 15 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 14 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 15 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 16 N -0.26 -7.56 10.42 33.74 0.35 -7.21 15 17 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 18 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 19 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 20 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.05 0.87 7.30 -51.93 -0.38 0.49 15 24 H 0.11 2.35 7.42 -52.49 -0.39 1.96 15 25 H 0.14 3.04 8.06 -52.49 -0.42 2.62 15 26 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 LS Contribution 229.27 15.07 3.46 3.46 Total: -1.00 -31.41 229.27 -4.86 -36.27 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.27 Total: 1.83 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -0.98 Total: -22.78 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.96 Total: -33.36 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.41 -4.86 -36.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260717278.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.425 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds