Wall clock time and date at job start Mon Mar 30 2020 02:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 C 1.40137 * 125.79894 * 84.72158 * 4 2 1 6 6 C 1.35243 * 107.98352 * 179.82669 * 5 4 2 7 7 N 1.36281 * 107.58371 * 0.42612 * 6 5 4 8 8 C 1.37396 * 126.11641 * 179.70861 * 7 6 5 9 9 H 1.08000 * 119.99835 * 359.97438 * 8 7 6 10 10 C 1.38994 * 119.99923 * 179.97438 * 8 7 6 11 11 N 1.31286 * 119.99819 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47028 * 89.99764 * 12 10 8 14 14 H 1.48497 * 109.47425 * 210.00323 * 12 10 8 15 15 H 1.48506 * 109.47301 * 330.00655 * 12 10 8 16 16 N 1.30938 * 125.80142 * 265.02404 * 4 2 1 17 17 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 18 18 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 19 19 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 21 21 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 22 22 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 24 24 H 1.07995 * 126.00429 * 359.97438 * 5 4 2 25 25 H 1.07998 * 126.20643 * 180.15571 * 6 5 4 26 26 H 0.97002 * 119.99824 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.2069 -0.1341 -2.4958 6 6 2.6757 -1.0906 -3.3292 7 7 2.7852 -2.2441 -2.6118 8 6 3.2203 -3.4566 -3.0895 9 1 3.5139 -3.5556 -4.1241 10 6 3.2825 -4.5559 -2.2412 11 7 2.9251 -4.4357 -0.9836 12 14 3.8733 -6.2046 -2.8907 13 1 5.3454 -6.3043 -2.7224 14 1 3.2134 -7.2996 -2.1353 15 1 3.5310 -6.3207 -4.3311 16 7 2.3745 -1.9724 -1.3003 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 1.8933 -0.5139 0.8900 21 1 1.6768 1.9562 0.8900 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 2.0052 0.8938 -2.7586 25 1 2.9151 -0.9643 -4.3747 26 1 2.9689 -5.2028 -0.3915 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260717278.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:45 Heat of formation + Delta-G solvation = 41.407854 kcal Electronic energy + Delta-G solvation = -10582.630069 eV Core-core repulsion = 8661.810918 eV Total energy + Delta-G solvation = -1920.819151 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.34213 -36.57963 -34.94362 -31.70230 -30.23768 -27.87950 -26.76862 -23.43649 -21.76171 -19.97411 -19.23038 -17.21626 -16.21948 -15.66588 -15.23728 -14.84345 -14.33986 -13.85845 -13.57275 -13.28081 -12.92989 -12.85977 -12.74610 -12.08321 -12.01354 -11.93332 -11.65509 -11.18012 -10.54043 -9.85792 -9.15523 -8.44849 -6.24898 1.31984 1.37142 1.54312 1.82337 2.13964 2.41315 2.89537 3.10164 4.08479 4.19888 4.45268 4.57229 4.69004 4.89521 4.93369 5.05965 5.07448 5.15700 5.27575 5.34862 5.50936 5.55060 5.69858 6.05689 6.41066 6.83371 7.54452 7.79869 8.55170 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.072859 B = 0.011874 C = 0.010816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.210947 B = 2357.445027 C = 2588.242718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.006 4.006 3 C -0.125 4.125 4 C -0.025 4.025 5 C -0.300 4.300 6 C -0.069 4.069 7 N -0.189 5.189 8 C -0.367 4.367 9 H 0.130 0.870 10 C -0.006 4.006 11 N -0.828 5.828 12 Si 1.017 2.983 13 H -0.264 1.264 14 H -0.274 1.274 15 H -0.249 1.249 16 N -0.315 5.315 17 H 0.058 0.942 18 H 0.084 0.916 19 H 0.026 0.974 20 H 0.052 0.948 21 H 0.080 0.920 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.146 0.854 25 H 0.171 0.829 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.372 4.793 -0.786 5.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.027 4.027 3 C -0.182 4.182 4 C -0.182 4.182 5 C -0.331 4.331 6 C -0.218 4.218 7 N 0.043 4.957 8 C -0.497 4.497 9 H 0.148 0.852 10 C -0.216 4.216 11 N -0.457 5.457 12 Si 0.836 3.164 13 H -0.189 1.189 14 H -0.199 1.199 15 H -0.172 1.172 16 N -0.145 5.145 17 H 0.077 0.923 18 H 0.102 0.898 19 H 0.045 0.955 20 H 0.070 0.930 21 H 0.099 0.901 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.164 0.836 25 H 0.188 0.812 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.262 3.526 0.027 3.745 hybrid contribution 0.242 -0.118 -0.716 0.765 sum -1.020 3.408 -0.690 3.624 Atomic orbital electron populations 1.21685 0.93620 1.00515 1.02600 1.19362 0.96045 0.95622 0.91631 1.21677 1.00265 0.93472 1.02819 1.22795 1.05314 0.92908 0.97161 1.20961 1.18570 1.00356 0.93240 1.22768 1.11980 0.87465 0.99561 1.45162 1.37522 1.07282 1.05707 1.20507 1.46300 0.84603 0.98323 0.85225 1.26798 0.95414 1.04389 0.95017 1.70391 1.37624 1.32201 1.05471 0.84637 0.78485 0.74124 0.79197 1.18890 1.19918 1.17178 1.78006 1.23152 1.15404 0.97949 0.92299 0.89757 0.95502 0.92950 0.90078 0.93979 0.91713 0.83644 0.81164 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.18 71.98 0.66 -3.63 15 2 C -0.01 -0.24 3.38 -11.54 -0.04 -0.28 15 3 C -0.12 -3.80 8.79 71.98 0.63 -3.17 15 4 C -0.02 -1.26 6.13 43.15 0.26 -0.99 15 5 C -0.30 -14.02 9.98 22.04 0.22 -13.80 15 6 C -0.07 -3.46 11.47 83.31 0.96 -2.50 15 7 N -0.19 -11.03 3.73 -190.43 -0.71 -11.74 15 8 C -0.37 -20.67 10.26 84.00 0.86 -19.81 15 9 H 0.13 6.51 7.83 -2.91 -0.02 6.48 15 10 C -0.01 -0.30 5.50 84.96 0.47 0.16 15 11 N -0.83 -49.10 11.82 21.66 0.26 -48.84 15 12 Si 1.02 40.44 29.55 68.60 2.03 42.47 15 13 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 14 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 15 H -0.25 -9.11 7.11 99.48 0.71 -8.40 15 16 N -0.31 -18.93 10.42 -47.17 -0.49 -19.42 15 17 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 18 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 19 H 0.03 1.02 8.14 -2.38 -0.02 1.00 15 20 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15 21 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 22 H 0.04 1.35 8.14 -2.39 -0.02 1.33 15 23 H 0.06 1.84 7.30 -2.39 -0.02 1.82 15 24 H 0.15 5.67 7.42 -2.91 -0.02 5.64 15 25 H 0.17 7.14 8.06 -2.91 -0.02 7.11 15 26 H 0.27 14.89 8.31 -92.71 -0.77 14.12 15 Total: -1.00 -69.86 229.27 6.25 -63.61 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.15 Total: 17.94 kcal Atomic # 6 Polarization: -48.04 SS G_CDS: 4.02 Total: -44.02 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -0.95 Total: -80.00 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -69.86 6.25 -63.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260717278.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.017 kcal (2) G-P(sol) polarization free energy of solvation -69.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds