Wall clock time and date at job start Mon Mar 30 2020 02:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00538 * 2 1 3 13 13 C 1.34937 * 126.04115 * 44.71373 * 12 2 1 14 14 C 1.35321 * 107.74883 * 179.83766 * 13 12 2 15 15 C 1.39871 * 107.91806 * 0.42416 * 14 13 12 16 16 N 1.30843 * 108.19918 * 359.73898 * 15 14 13 17 17 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 18 18 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 20 20 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 21 21 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 22 22 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 23 23 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 24 24 H 1.08005 * 126.13012 * 0.02562 * 13 12 2 25 25 H 1.07997 * 126.04073 * 180.16192 * 14 13 12 26 26 H 1.07991 * 125.90222 * 179.71841 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8300 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0184 -0.6905 -1.1963 13 6 1.5519 -0.5291 -2.4521 14 6 2.2671 -1.3405 -3.2653 15 6 3.1962 -2.0284 -2.4779 16 7 3.0479 -1.6395 -1.2374 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.6766 1.9563 0.8900 21 1 3.1300 1.4425 -0.0005 22 1 1.6767 1.9564 -0.8899 23 1 0.7095 1.1617 3.4845 24 1 0.7531 0.1318 -2.7547 25 1 2.1399 -1.4424 -4.3329 26 1 3.9120 -2.7551 -2.8324 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260956598.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:32 Heat of formation + Delta-G solvation = 57.875494 kcal Electronic energy + Delta-G solvation = -10903.987994 eV Core-core repulsion = 8983.882933 eV Total energy + Delta-G solvation = -1920.105061 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.80046 -37.35597 -33.72571 -30.88570 -30.17211 -27.84173 -27.30219 -23.43591 -21.64833 -20.56852 -18.35093 -17.55557 -16.35419 -15.60179 -15.20052 -14.74552 -14.32986 -13.64831 -13.53316 -13.26972 -13.01927 -12.75730 -12.57504 -12.54618 -12.14740 -11.98001 -11.42368 -10.79167 -10.54722 -10.09964 -9.22105 -8.18805 -6.30834 1.35919 1.40443 1.41552 1.49544 2.08324 2.18993 2.40945 3.08200 4.14846 4.21677 4.48318 4.64616 4.71795 4.82710 4.88714 5.04746 5.12056 5.32005 5.37409 5.51295 5.80519 5.85049 5.98318 6.22996 6.51722 6.80770 7.23891 7.38440 8.83749 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.057004 B = 0.015191 C = 0.013086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.073599 B = 1842.780288 C = 2139.122057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.287 3.713 3 C -0.131 4.131 4 C -0.532 4.532 5 H 0.054 0.946 6 C 0.029 3.971 7 N -0.903 5.903 8 Si 0.959 3.041 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.278 1.278 12 N -0.346 5.346 13 C 0.030 3.970 14 C -0.291 4.291 15 C 0.008 3.992 16 N -0.338 5.338 17 H 0.049 0.951 18 H 0.025 0.975 19 H 0.089 0.911 20 H 0.088 0.912 21 H 0.018 0.982 22 H 0.041 0.959 23 H 0.268 0.732 24 H 0.187 0.813 25 H 0.170 0.830 26 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 -0.603 -6.888 6.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.206 3.794 3 C -0.190 4.190 4 C -0.570 4.570 5 H 0.072 0.928 6 C -0.171 4.171 7 N -0.541 5.541 8 Si 0.785 3.215 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.204 1.204 12 N -0.128 5.128 13 C -0.118 4.118 14 C -0.321 4.321 15 C -0.176 4.176 16 N -0.160 5.160 17 H 0.068 0.932 18 H 0.044 0.956 19 H 0.107 0.893 20 H 0.107 0.893 21 H 0.037 0.963 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.204 0.796 25 H 0.188 0.812 26 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.312 -0.530 -5.390 5.425 hybrid contribution 0.064 -0.312 0.046 0.322 sum -0.248 -0.842 -5.345 5.416 Atomic orbital electron populations 1.21992 0.94818 0.99863 1.02397 1.18623 0.91899 0.89184 0.79674 1.22003 0.98421 0.96730 1.01860 1.21258 1.32333 1.12950 0.90484 0.92783 1.25433 0.94968 0.95720 1.01016 1.69816 1.36695 1.23030 1.24589 0.85601 0.78467 0.78630 0.78833 1.20525 1.19801 1.20362 1.49605 1.25268 1.30162 1.07754 1.23030 1.01387 1.02165 0.85260 1.21729 1.03134 1.05635 1.01604 1.24393 1.01117 1.01537 0.90569 1.77330 1.08614 1.07937 1.22130 0.93188 0.95592 0.89283 0.89335 0.96325 0.93985 0.92218 0.79566 0.81224 0.78161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 8.06 71.98 0.58 -5.44 15 2 C 0.29 14.27 0.96 2.86 0.00 14.27 15 3 C -0.13 -6.24 8.51 71.98 0.61 -5.62 15 4 C -0.53 -29.79 7.98 25.60 0.20 -29.58 15 5 H 0.05 3.24 6.92 -2.91 -0.02 3.22 15 6 C 0.03 1.55 5.15 84.65 0.44 1.98 15 7 N -0.90 -47.79 9.35 21.44 0.20 -47.59 15 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 15 9 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 12 N -0.35 -16.11 3.43 -311.24 -1.07 -17.17 15 13 C 0.03 1.12 10.60 83.54 0.89 2.00 15 14 C -0.29 -9.71 10.80 21.99 0.24 -9.47 15 15 C 0.01 0.30 12.03 85.24 1.03 1.33 15 16 N -0.34 -16.08 11.20 -57.02 -0.64 -16.72 15 17 H 0.05 1.91 7.36 -2.39 -0.02 1.89 15 18 H 0.02 1.19 8.14 -2.39 -0.02 1.17 15 19 H 0.09 4.36 6.07 -2.39 -0.01 4.35 15 20 H 0.09 4.45 6.07 -2.39 -0.01 4.43 15 21 H 0.02 0.89 8.14 -2.39 -0.02 0.87 15 22 H 0.04 1.71 8.14 -2.39 -0.02 1.70 15 23 H 0.27 13.51 8.31 -92.70 -0.77 12.74 15 24 H 0.19 5.63 7.55 -2.91 -0.02 5.61 15 25 H 0.17 4.22 8.06 -2.91 -0.02 4.20 15 26 H 0.20 5.70 8.06 -2.92 -0.02 5.68 15 Total: -1.00 -61.26 221.75 5.66 -55.60 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.16 Total: 10.55 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 3.98 Total: -30.53 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -1.51 Total: -81.48 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -61.26 5.66 -55.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956598.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.478 kcal (2) G-P(sol) polarization free energy of solvation -61.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds