Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 C 1.50696 * 109.47436 * 120.00279 * 2 1 3 5 5 H 1.07998 * 119.99827 * 119.86069 * 4 2 1 6 6 C 1.37882 * 120.00075 * 299.86076 * 4 2 1 7 7 N 1.31515 * 119.99903 * 1.46529 * 6 4 2 8 8 Si 1.86791 * 120.00142 * 181.19600 * 6 4 2 9 9 H 1.48502 * 109.47207 * 270.27171 * 8 6 4 10 10 H 1.48501 * 109.47141 * 30.27228 * 8 6 4 11 11 H 1.48500 * 109.47633 * 150.27109 * 8 6 4 12 12 N 1.46503 * 109.46986 * 240.00539 * 2 1 3 13 13 C 1.36876 * 126.39958 * 59.99489 * 12 2 1 14 14 C 1.34670 * 106.81999 * 180.02562 * 13 12 2 15 15 N 1.34124 * 108.01488 * 0.02562 * 14 13 12 16 16 C 1.30499 * 109.26003 * 359.72655 * 15 14 13 17 17 H 1.09005 * 109.47057 * 292.75197 * 1 2 3 18 18 H 1.08998 * 109.47327 * 52.75130 * 1 2 3 19 19 H 1.08999 * 109.47158 * 172.75357 * 1 2 3 20 20 H 1.08994 * 109.47388 * 187.38325 * 3 2 1 21 21 H 1.09005 * 109.47559 * 307.38680 * 3 2 1 22 22 H 1.09004 * 109.47084 * 67.38684 * 3 2 1 23 23 H 0.97005 * 119.99966 * 356.83273 * 7 6 4 24 24 H 1.08007 * 126.59233 * 359.96794 * 13 12 2 25 25 H 1.08003 * 125.98813 * 179.97438 * 14 13 12 26 26 H 1.08001 * 125.64866 * 180.28862 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6514 -1.5898 1.1312 6 6 1.7017 -0.2378 2.4827 7 7 0.9242 0.8160 2.6037 8 14 2.3519 -1.0987 4.0076 9 1 1.3982 -2.1588 4.4221 10 1 3.6712 -1.7100 3.7063 11 1 2.5031 -0.1117 5.1068 12 7 2.0183 -0.6905 -1.1963 13 6 1.7696 -0.3389 -2.4955 14 6 2.4048 -1.2381 -3.2710 15 7 3.0240 -2.1152 -2.4671 16 6 2.8014 -1.7903 -1.2230 17 1 -0.3633 0.3975 0.9477 18 1 -0.3634 0.6220 -0.8180 19 1 -0.3633 -1.0194 -0.1296 20 1 3.1219 1.4454 -0.1321 21 1 1.5728 1.9931 -0.8166 22 1 1.7885 1.9168 0.9487 23 1 0.6208 1.2883 1.8125 24 1 1.1769 0.4983 -2.8338 25 1 2.4134 -1.2512 -4.3509 26 1 3.1792 -2.3153 -0.3581 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260965280.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = 64.239250 kcal Electronic energy + Delta-G solvation = -10987.755711 eV Core-core repulsion = 9067.926603 eV Total energy + Delta-G solvation = -1919.829108 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.20905 -36.37057 -32.15779 -29.16420 -28.75139 -26.36968 -25.32346 -21.63657 -20.43752 -19.22791 -17.70250 -15.70762 -14.34241 -13.94428 -13.80948 -13.13954 -12.99238 -12.74846 -12.20234 -11.73818 -11.58426 -11.05033 -10.84089 -10.71572 -10.47652 -10.24165 -9.22837 -8.79968 -8.73150 -8.55894 -7.71128 -6.60421 -4.48708 2.99007 3.29839 3.32448 3.48044 3.90137 3.94316 4.30380 5.03151 5.49193 5.76260 5.83849 6.11298 6.17211 6.25363 6.39588 6.40347 6.61432 6.71621 6.90103 7.14766 7.23957 7.51411 7.80467 7.91014 8.30065 8.45575 8.93572 9.22586 10.66307 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.057774 B = 0.015309 C = 0.013159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.527183 B = 1828.560835 C = 2127.282067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.262 3.738 3 C -0.157 4.157 4 C -0.611 4.611 5 H 0.067 0.933 6 C 0.034 3.966 7 N -0.907 5.907 8 Si 1.075 2.925 9 H -0.284 1.284 10 H -0.285 1.285 11 H -0.281 1.281 12 N -0.417 5.417 13 C -0.070 4.070 14 C -0.053 4.053 15 N -0.523 5.523 16 C 0.194 3.806 17 H 0.089 0.911 18 H 0.027 0.973 19 H 0.045 0.955 20 H 0.045 0.955 21 H 0.028 0.972 22 H 0.087 0.913 23 H 0.280 0.720 24 H 0.157 0.843 25 H 0.156 0.844 26 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -0.043 -3.366 3.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.179 3.821 3 C -0.215 4.215 4 C -0.648 4.648 5 H 0.085 0.915 6 C -0.172 4.172 7 N -0.546 5.546 8 Si 0.902 3.098 9 H -0.211 1.211 10 H -0.211 1.211 11 H -0.207 1.207 12 N -0.095 5.095 13 C -0.206 4.206 14 C -0.202 4.202 15 N -0.243 5.243 16 C -0.089 4.089 17 H 0.107 0.893 18 H 0.046 0.954 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.047 0.953 22 H 0.105 0.895 23 H 0.097 0.903 24 H 0.175 0.825 25 H 0.173 0.827 26 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.565 -0.578 -1.806 1.979 hybrid contribution -0.537 0.776 -1.517 1.787 sum 0.028 0.198 -3.324 3.330 Atomic orbital electron populations 1.22342 0.96609 1.00617 1.02056 1.18860 0.91560 0.90244 0.81409 1.22329 1.00333 0.96920 1.01948 1.21971 1.37012 1.15216 0.90620 0.91522 1.25821 0.94040 0.96173 1.01119 1.70905 1.30666 1.18320 1.34713 0.83440 0.76064 0.75565 0.74743 1.21076 1.21081 1.20688 1.46094 1.35082 1.21641 1.06707 1.22504 1.08954 1.04527 0.84652 1.22064 1.03364 0.95877 0.98932 1.70251 1.25198 1.28095 1.00731 1.24826 0.97374 0.90427 0.96280 0.89253 0.95362 0.93592 0.93549 0.95284 0.89459 0.90306 0.82547 0.82703 0.78382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 8.16 37.16 0.30 -3.22 15 2 C 0.26 6.09 0.94 -132.97 -0.12 5.96 15 3 C -0.16 -3.48 8.15 37.16 0.30 -3.18 15 4 C -0.61 -15.46 7.77 -34.44 -0.27 -15.72 15 5 H 0.07 1.67 5.56 -52.49 -0.29 1.38 15 6 C 0.03 0.87 5.10 -17.82 -0.09 0.78 15 7 N -0.91 -24.20 12.13 55.43 0.67 -23.53 15 8 Si 1.08 23.06 29.90 -169.99 -5.08 17.97 15 9 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 10 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 12 N -0.42 -9.27 2.61 -105.82 -0.28 -9.55 15 13 C -0.07 -1.39 10.87 -16.56 -0.18 -1.57 15 14 C -0.05 -1.04 11.87 -17.81 -0.21 -1.25 15 15 N -0.52 -11.51 11.25 -14.67 -0.17 -11.68 15 16 C 0.19 4.33 11.62 -90.38 -1.05 3.28 15 17 H 0.09 2.12 5.19 -51.93 -0.27 1.85 15 18 H 0.03 0.55 8.10 -51.93 -0.42 0.13 15 19 H 0.04 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.05 1.04 8.14 -51.93 -0.42 0.61 15 21 H 0.03 0.57 8.10 -51.93 -0.42 0.15 15 22 H 0.09 2.06 5.25 -51.93 -0.27 1.78 15 23 H 0.28 7.25 3.56 -40.82 -0.15 7.11 15 24 H 0.16 2.68 8.06 -52.48 -0.42 2.25 15 25 H 0.16 2.51 8.06 -52.48 -0.42 2.09 15 26 H 0.20 4.20 6.29 -52.49 -0.33 3.87 15 LS Contribution 216.12 15.07 3.26 3.26 Total: -1.00 -27.75 216.12 -5.55 -33.30 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -2.64 Total: 5.15 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -1.32 Total: -14.92 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.23 Total: -44.76 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.08 Total: 17.97 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -27.75 -5.55 -33.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260965280.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.538 kcal (2) G-P(sol) polarization free energy of solvation -27.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds