Wall clock time and date at job start Mon Mar 30 2020 02:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 C 1.50696 * 109.47436 * 120.00279 * 2 1 3 5 5 H 1.07998 * 119.99827 * 119.86069 * 4 2 1 6 6 C 1.37882 * 120.00075 * 299.86076 * 4 2 1 7 7 N 1.31515 * 119.99903 * 1.46529 * 6 4 2 8 8 Si 1.86791 * 120.00142 * 181.19600 * 6 4 2 9 9 H 1.48502 * 109.47207 * 270.27171 * 8 6 4 10 10 H 1.48501 * 109.47141 * 30.27228 * 8 6 4 11 11 H 1.48500 * 109.47633 * 150.27109 * 8 6 4 12 12 N 1.46503 * 109.46986 * 240.00539 * 2 1 3 13 13 C 1.36876 * 126.39958 * 59.99489 * 12 2 1 14 14 C 1.34670 * 106.81999 * 180.02562 * 13 12 2 15 15 N 1.34124 * 108.01488 * 0.02562 * 14 13 12 16 16 C 1.30499 * 109.26003 * 359.72655 * 15 14 13 17 17 H 1.09005 * 109.47057 * 292.75197 * 1 2 3 18 18 H 1.08998 * 109.47327 * 52.75130 * 1 2 3 19 19 H 1.08999 * 109.47158 * 172.75357 * 1 2 3 20 20 H 1.08994 * 109.47388 * 187.38325 * 3 2 1 21 21 H 1.09005 * 109.47559 * 307.38680 * 3 2 1 22 22 H 1.09004 * 109.47084 * 67.38684 * 3 2 1 23 23 H 0.97005 * 119.99966 * 356.83273 * 7 6 4 24 24 H 1.08007 * 126.59233 * 359.96794 * 13 12 2 25 25 H 1.08003 * 125.98813 * 179.97438 * 14 13 12 26 26 H 1.08001 * 125.64866 * 180.28862 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6514 -1.5898 1.1312 6 6 1.7017 -0.2378 2.4827 7 7 0.9242 0.8160 2.6037 8 14 2.3519 -1.0987 4.0076 9 1 1.3982 -2.1588 4.4221 10 1 3.6712 -1.7100 3.7063 11 1 2.5031 -0.1117 5.1068 12 7 2.0183 -0.6905 -1.1963 13 6 1.7696 -0.3389 -2.4955 14 6 2.4048 -1.2381 -3.2710 15 7 3.0240 -2.1152 -2.4671 16 6 2.8014 -1.7903 -1.2230 17 1 -0.3633 0.3975 0.9477 18 1 -0.3634 0.6220 -0.8180 19 1 -0.3633 -1.0194 -0.1296 20 1 3.1219 1.4454 -0.1321 21 1 1.5728 1.9931 -0.8166 22 1 1.7885 1.9168 0.9487 23 1 0.6208 1.2883 1.8125 24 1 1.1769 0.4983 -2.8338 25 1 2.4134 -1.2512 -4.3509 26 1 3.1792 -2.3153 -0.3581 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260965280.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:33 Heat of formation + Delta-G solvation = 49.691628 kcal Electronic energy + Delta-G solvation = -10988.386543 eV Core-core repulsion = 9067.926603 eV Total energy + Delta-G solvation = -1920.459940 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.85521 -38.17765 -33.98861 -30.92087 -30.36543 -28.15074 -27.22758 -23.34908 -22.12151 -20.92103 -19.50750 -17.49511 -16.03204 -15.70194 -15.50654 -14.77377 -14.65388 -14.47986 -13.93190 -13.47834 -13.38803 -12.86713 -12.54347 -12.50791 -12.24893 -11.92411 -10.90381 -10.64612 -10.55778 -10.33960 -9.30264 -8.58869 -6.47837 1.37068 1.57271 1.62504 1.80571 2.22055 2.31889 2.53921 3.10052 3.93910 4.09308 4.17190 4.37703 4.48146 4.59275 4.67432 4.77774 4.88996 4.91178 5.15384 5.42637 5.44629 5.90670 5.95641 6.09092 6.47025 6.57782 7.28934 7.30384 8.70106 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.057774 B = 0.015309 C = 0.013159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.527183 B = 1828.560835 C = 2127.282067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.255 3.745 3 C -0.147 4.147 4 C -0.624 4.624 5 H 0.062 0.938 6 C -0.004 4.004 7 N -0.929 5.929 8 Si 1.113 2.887 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.283 1.283 12 N -0.426 5.426 13 C -0.072 4.072 14 C -0.056 4.056 15 N -0.537 5.537 16 C 0.171 3.829 17 H 0.073 0.927 18 H 0.052 0.948 19 H 0.035 0.965 20 H 0.036 0.964 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.279 0.721 24 H 0.187 0.813 25 H 0.190 0.810 26 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 0.069 -4.205 4.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.173 3.827 3 C -0.205 4.205 4 C -0.662 4.662 5 H 0.080 0.920 6 C -0.206 4.206 7 N -0.569 5.569 8 Si 0.936 3.064 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.209 1.209 12 N -0.104 5.104 13 C -0.207 4.207 14 C -0.205 4.205 15 N -0.257 5.257 16 C -0.111 4.111 17 H 0.091 0.909 18 H 0.071 0.929 19 H 0.054 0.946 20 H 0.056 0.944 21 H 0.072 0.928 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.204 0.796 25 H 0.207 0.793 26 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.491 -0.472 -2.671 2.757 hybrid contribution -0.516 0.744 -1.348 1.624 sum -0.025 0.272 -4.020 4.029 Atomic orbital electron populations 1.22200 0.95973 1.00340 1.02125 1.18824 0.92009 0.90566 0.81344 1.22188 0.99839 0.96490 1.02029 1.22263 1.36838 1.15254 0.91823 0.91982 1.26889 0.93830 0.96246 1.03604 1.70961 1.31844 1.19216 1.34886 0.82937 0.76288 0.74972 0.72215 1.20225 1.19888 1.20878 1.46086 1.35378 1.21725 1.07255 1.23062 1.08821 1.05266 0.83557 1.22677 1.02362 0.94972 1.00471 1.70258 1.25711 1.28902 1.00878 1.24930 0.98383 0.91122 0.96687 0.90877 0.92861 0.94584 0.94439 0.92787 0.91051 0.90550 0.79611 0.79254 0.78517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.41 8.16 71.98 0.59 -5.82 15 2 C 0.26 11.61 0.94 2.85 0.00 11.61 15 3 C -0.15 -6.33 8.15 71.98 0.59 -5.75 15 4 C -0.62 -31.43 7.77 25.60 0.20 -31.23 15 5 H 0.06 3.11 5.56 -2.91 -0.02 3.10 15 6 C 0.00 -0.23 5.10 84.66 0.43 0.21 15 7 N -0.93 -49.44 12.13 21.45 0.26 -49.18 15 8 Si 1.11 46.07 29.90 68.60 2.05 48.12 15 9 H -0.28 -11.01 7.11 99.48 0.71 -10.30 15 10 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 15 12 N -0.43 -18.26 2.61 -488.72 -1.27 -19.54 15 13 C -0.07 -2.64 10.87 83.09 0.90 -1.74 15 14 C -0.06 -2.05 11.87 83.52 0.99 -1.06 15 15 N -0.54 -22.81 11.25 -200.31 -2.25 -25.06 15 16 C 0.17 7.52 11.62 180.26 2.09 9.61 15 17 H 0.07 3.43 5.19 -2.38 -0.01 3.42 15 18 H 0.05 1.99 8.10 -2.39 -0.02 1.97 15 19 H 0.03 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 21 H 0.05 2.00 8.10 -2.38 -0.02 1.98 15 22 H 0.07 3.32 5.25 -2.39 -0.01 3.31 15 23 H 0.28 14.38 3.56 -92.70 -0.33 14.05 15 24 H 0.19 5.59 8.06 -2.91 -0.02 5.56 15 25 H 0.19 5.39 8.06 -2.91 -0.02 5.37 15 26 H 0.20 8.40 6.29 -2.91 -0.02 8.38 15 Total: -1.00 -57.02 216.12 6.19 -50.83 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 1.61 Total: 18.99 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 5.80 Total: -24.17 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -3.27 Total: -93.78 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.05 Total: 48.12 kcal Total: -57.02 6.19 -50.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260965280.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.523 kcal (2) G-P(sol) polarization free energy of solvation -57.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds