Wall clock time and date at job start Mon Mar 30 2020 01:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86798 * 120.00053 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00150 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99709 * 3 2 1 7 7 C 1.40162 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.40231 * 120.00492 * 0.02562 * 7 2 1 10 10 N 1.37524 * 126.65578 * 359.67852 * 9 7 2 11 11 H 0.97008 * 126.20043 * 359.97370 * 10 9 7 12 12 N 1.40050 * 107.59822 * 179.86707 * 10 9 7 13 13 C 1.31125 * 109.21709 * 0.39719 * 12 10 9 14 14 C 1.39194 * 108.83136 * 359.77440 * 13 12 10 15 15 C 1.50991 * 107.31111 * 179.97438 * 14 13 12 16 16 O 1.43916 * 105.96547 * 342.24562 * 15 14 13 17 17 C 1.43900 * 105.00135 * 28.63229 * 16 15 14 18 18 H 0.97005 * 119.99645 * 0.02562 * 1 2 3 19 19 H 1.09004 * 110.15297 * 101.37270 * 15 14 13 20 20 H 1.09004 * 110.15395 * 223.11793 * 15 14 13 21 21 H 1.08994 * 110.14196 * 212.19178 * 17 16 15 22 22 H 1.08999 * 110.19460 * 90.49878 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 1.2768 2.7464 -0.0006 5 1 3.0954 1.6964 1.2124 6 1 3.0954 1.6962 -1.2125 7 6 2.0083 -1.2139 0.0005 8 1 3.0883 -1.2140 0.0001 9 6 1.3072 -2.4283 0.0005 10 7 -0.0588 -2.5877 0.0062 11 1 -0.7186 -1.8766 0.0114 12 7 -0.3247 -3.9627 0.0008 13 6 0.8090 -4.6216 0.0008 14 6 1.8594 -3.7082 0.0010 15 6 3.1443 -4.5012 0.0016 16 8 2.7890 -5.8304 0.4237 17 6 1.4245 -6.0033 0.0004 18 1 -0.4850 0.8401 -0.0004 19 1 3.5703 -4.5269 -1.0014 20 1 3.8560 -4.0627 0.7013 21 1 0.8941 -6.6506 0.6986 22 1 1.3928 -6.4281 -1.0029 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261010489.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:33 Heat of formation + Delta-G solvation = 0.614313 kcal Electronic energy + Delta-G solvation = -10445.093183 eV Core-core repulsion = 8386.671997 eV Total energy + Delta-G solvation = -2058.421187 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.68205 -38.79674 -35.73648 -31.86752 -31.45406 -28.96030 -27.40252 -25.17132 -21.46726 -20.44190 -19.36447 -17.36822 -16.98833 -16.53580 -16.07621 -15.73024 -14.59359 -14.22754 -13.89066 -13.31606 -13.23505 -12.96190 -12.70135 -12.54542 -11.90747 -11.42925 -10.98188 -10.72065 -9.90969 -9.03652 -8.99147 -6.72229 1.17532 1.38896 1.53761 1.70999 2.04287 2.13315 2.54374 3.12001 3.26557 3.51457 4.42436 4.56662 4.60806 4.83657 4.95722 5.06012 5.26320 5.47322 5.75192 5.80794 6.22548 6.42112 6.61063 7.28344 7.54992 8.10501 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.072475 B = 0.013454 C = 0.011471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.245709 B = 2080.598552 C = 2440.373826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.032 3.968 3 Si 1.016 2.984 4 H -0.266 1.266 5 H -0.256 1.256 6 H -0.255 1.255 7 C -0.470 4.470 8 H 0.105 0.895 9 C 0.272 3.728 10 N -0.504 5.504 11 H 0.439 0.561 12 N -0.380 5.380 13 C 0.007 3.993 14 C -0.477 4.477 15 C 0.164 3.836 16 O -0.378 6.378 17 C 0.154 3.846 18 H 0.305 0.695 19 H 0.060 0.940 20 H 0.078 0.922 21 H 0.110 0.890 22 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 0.160 -0.719 4.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.182 4.182 3 Si 0.835 3.165 4 H -0.190 1.190 5 H -0.180 1.180 6 H -0.179 1.179 7 C -0.506 4.506 8 H 0.123 0.877 9 C 0.149 3.851 10 N -0.225 5.225 11 H 0.293 0.707 12 N -0.205 5.205 13 C -0.158 4.158 14 C -0.490 4.490 15 C 0.087 3.913 16 O -0.296 6.296 17 C 0.076 3.924 18 H 0.117 0.883 19 H 0.078 0.922 20 H 0.096 0.904 21 H 0.128 0.872 22 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.671 -0.038 -0.604 2.739 hybrid contribution 0.250 1.334 -0.091 1.360 sum 2.921 1.295 -0.694 3.270 Atomic orbital electron populations 1.68787 1.09449 1.32410 1.37856 1.27158 0.95683 1.05761 0.89592 0.84705 0.78172 0.73203 0.80436 1.19009 1.17982 1.17867 1.19379 0.95928 0.88673 1.46580 0.87689 1.18187 0.83396 0.93367 0.90200 1.47522 1.06121 1.04054 1.64832 0.70684 1.76314 1.21623 0.89063 1.33452 1.23766 0.92550 0.99284 1.00202 1.21530 0.97544 0.92985 1.36925 1.20471 0.92344 0.79743 0.98702 1.88914 1.27019 1.32281 1.81370 1.21007 0.81257 0.88349 1.01835 0.88349 0.92167 0.90418 0.87187 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -41.45 10.74 21.87 0.23 -41.21 14 2 C 0.03 1.50 5.50 85.32 0.47 1.97 14 3 Si 1.02 35.13 29.56 68.60 2.03 37.16 14 4 H -0.27 -8.66 7.11 99.48 0.71 -7.95 14 5 H -0.26 -8.59 7.11 99.48 0.71 -7.88 14 6 H -0.25 -8.50 7.11 99.48 0.71 -7.80 14 7 C -0.47 -24.42 9.36 23.22 0.22 -24.20 14 8 H 0.11 5.09 7.85 -2.91 -0.02 5.06 14 9 C 0.27 15.24 6.76 39.01 0.26 15.51 14 10 N -0.50 -28.37 7.10 -51.55 -0.37 -28.73 14 11 H 0.44 24.15 6.36 -213.34 -1.36 22.80 14 12 N -0.38 -20.80 12.65 -47.21 -0.60 -21.40 14 13 C 0.01 0.34 8.26 43.07 0.36 0.70 14 14 C -0.48 -24.83 7.11 -19.26 -0.14 -24.97 14 15 C 0.16 6.97 7.62 71.33 0.54 7.51 14 16 O -0.38 -15.15 11.71 -148.98 -1.75 -16.90 14 17 C 0.15 5.91 7.63 71.42 0.54 6.45 14 18 H 0.30 13.13 8.29 -92.70 -0.77 12.36 14 19 H 0.06 2.33 8.14 -2.38 -0.02 2.32 14 20 H 0.08 3.10 8.14 -2.39 -0.02 3.08 14 21 H 0.11 3.63 8.14 -2.39 -0.02 3.61 14 22 H 0.10 3.13 8.14 -2.39 -0.02 3.11 14 Total: -1.00 -61.11 200.39 1.71 -59.40 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -0.11 Total: 28.72 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 2.26 Total: -17.04 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -0.73 Total: -91.34 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -1.75 Total: -16.90 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.16 kcal Total: -61.11 1.71 -59.40 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010489.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.014 kcal (2) G-P(sol) polarization free energy of solvation -61.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds