Wall clock time and date at job start Mon Mar 30 2020 02:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34667 * 126.59090 * 2 1 4 4 N 1.34123 * 108.01799 * 179.74223 * 3 2 1 5 5 C 1.30496 * 109.25985 * 0.36844 * 4 3 2 6 6 C 1.50696 * 125.65101 * 179.89180 * 5 4 3 7 7 C 1.53002 * 109.47300 * 304.69198 * 6 5 4 8 8 C 1.50706 * 109.46925 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00196 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99394 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00338 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99426 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47361 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47264 * 120.00115 * 12 10 8 15 15 H 1.48500 * 109.46969 * 239.99720 * 12 10 8 16 16 N 1.35039 * 108.69762 * 359.63067 * 5 4 3 17 17 H 0.96999 * 126.39803 * 180.24820 * 16 5 4 18 18 H 1.08996 * 109.46941 * 270.04611 * 1 2 3 19 19 H 1.08995 * 109.46759 * 30.04418 * 1 2 3 20 20 H 1.08996 * 109.47057 * 150.04604 * 1 2 3 21 21 H 1.08002 * 125.98673 * 359.92430 * 3 2 1 22 22 H 1.09004 * 109.47043 * 184.69372 * 6 5 4 23 23 H 1.09004 * 109.47476 * 64.69446 * 6 5 4 24 24 H 1.09000 * 109.46497 * 60.00269 * 7 6 5 25 25 H 1.09000 * 109.47312 * 300.00049 * 7 6 5 26 26 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 0.0057 5 6 3.5969 -0.6508 0.0014 6 6 4.8319 -1.5144 0.0031 7 6 5.7248 -1.1298 -1.1783 8 6 6.9595 -1.9939 -1.1769 9 1 7.0937 -2.7427 -0.4103 10 6 7.9178 -1.8283 -2.1543 11 7 7.7542 -0.9168 -3.0880 12 14 9.4480 -2.8999 -2.1529 13 1 9.3922 -3.8411 -1.0056 14 1 9.5151 -3.6686 -3.4217 15 1 10.6534 -2.0413 -2.0300 16 7 2.3231 -1.0990 0.0009 17 1 2.0393 -2.0266 0.0014 18 1 -0.3633 0.0008 1.0276 19 1 -0.3633 0.8896 -0.5145 20 1 -0.3633 -0.8904 -0.5131 21 1 1.9865 2.1117 -0.0012 22 1 4.5430 -2.5617 -0.0856 23 1 5.3779 -1.3658 0.9347 24 1 6.0136 -0.0825 -1.0895 25 1 5.1789 -1.2784 -2.1099 26 1 8.4282 -0.8007 -3.7758 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261013600.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:15 Heat of formation + Delta-G solvation = 10.760845 kcal Electronic energy + Delta-G solvation = -10154.372480 eV Core-core repulsion = 8232.224375 eV Total energy + Delta-G solvation = -1922.148105 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.95890 -35.98215 -33.95802 -33.48407 -31.75956 -28.18293 -25.97750 -23.54171 -22.02215 -20.97387 -18.75074 -17.89064 -16.57010 -16.16215 -15.19477 -15.06256 -14.38615 -14.28983 -13.86278 -13.59427 -13.25802 -12.94751 -12.85814 -12.42749 -11.94465 -11.63031 -11.24585 -10.94662 -10.80818 -10.55180 -9.03976 -8.17922 -6.31122 1.12569 1.42266 1.43766 1.56978 2.21426 2.25511 2.44419 3.15320 3.71770 4.13747 4.26672 4.42484 4.52596 4.69923 4.82494 4.91242 5.06079 5.12552 5.39383 5.49345 5.67445 5.84410 5.90860 6.20262 6.58475 6.87412 7.27337 7.38719 8.94653 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.107179 B = 0.008054 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 261.182295 B = 3475.602812 C = 3574.423291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.025 4.025 3 C -0.066 4.066 4 N -0.536 5.536 5 C 0.204 3.796 6 C -0.018 4.018 7 C 0.042 3.958 8 C -0.542 4.542 9 H 0.072 0.928 10 C -0.004 4.004 11 N -0.936 5.936 12 Si 0.972 3.028 13 H -0.256 1.256 14 H -0.278 1.278 15 H -0.281 1.281 16 N -0.556 5.556 17 H 0.431 0.569 18 H 0.088 0.912 19 H 0.094 0.906 20 H 0.078 0.922 21 H 0.182 0.818 22 H 0.089 0.911 23 H 0.079 0.921 24 H -0.010 1.010 25 H -0.017 1.017 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.379 -2.467 6.330 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.142 4.142 3 C -0.213 4.213 4 N -0.256 5.256 5 C -0.060 4.060 6 C -0.057 4.057 7 C 0.004 3.996 8 C -0.580 4.580 9 H 0.090 0.910 10 C -0.201 4.201 11 N -0.577 5.577 12 Si 0.796 3.204 13 H -0.179 1.179 14 H -0.204 1.204 15 H -0.207 1.207 16 N -0.162 5.162 17 H 0.271 0.729 18 H 0.107 0.893 19 H 0.113 0.887 20 H 0.097 0.903 21 H 0.199 0.801 22 H 0.107 0.893 23 H 0.097 0.903 24 H 0.008 0.992 25 H 0.001 0.999 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.628 -1.847 6.203 14.190 hybrid contribution 0.195 -0.917 -0.422 1.028 sum -12.433 -2.764 5.781 13.987 Atomic orbital electron populations 1.20325 0.83492 1.04642 1.03992 1.21924 0.96221 0.86306 1.09711 1.22592 0.88077 1.00218 1.10448 1.70176 1.24402 1.09998 1.21029 1.23549 0.86880 0.91082 1.04536 1.20023 0.88840 0.96298 1.00557 1.18794 0.93423 0.95536 0.91820 1.21726 1.04909 1.19364 1.12029 0.91029 1.26077 1.02218 0.96872 0.94981 1.70159 1.36448 1.35321 1.15737 0.85297 0.78149 0.78461 0.78485 1.17919 1.20382 1.20678 1.43200 1.06029 1.10243 1.56679 0.72907 0.89338 0.88702 0.90311 0.80065 0.89262 0.90267 0.99174 0.99868 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.44 71.24 0.74 -0.31 15 2 C -0.03 -0.71 7.24 40.95 0.30 -0.41 15 3 C -0.07 -2.31 11.79 83.52 0.98 -1.32 15 4 N -0.54 -23.86 11.21 -188.14 -2.11 -25.97 15 5 C 0.20 8.25 7.43 138.13 1.03 9.28 15 6 C -0.02 -0.78 5.78 29.85 0.17 -0.61 15 7 C 0.04 2.37 4.93 29.85 0.15 2.52 15 8 C -0.54 -31.33 9.11 25.60 0.23 -31.09 15 9 H 0.07 3.83 7.74 -2.91 -0.02 3.81 15 10 C 0.00 -0.23 5.46 84.66 0.46 0.23 15 11 N -0.94 -59.27 13.29 21.45 0.28 -58.98 15 12 Si 0.97 44.72 29.54 68.60 2.03 46.75 15 13 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 14 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 16 N -0.56 -16.78 6.15 -174.60 -1.07 -17.85 15 17 H 0.43 9.54 8.96 -92.71 -0.83 8.71 15 18 H 0.09 1.11 8.14 -2.39 -0.02 1.09 15 19 H 0.09 1.26 8.14 -2.39 -0.02 1.24 15 20 H 0.08 1.01 8.14 -2.39 -0.02 0.99 15 21 H 0.18 5.19 8.06 -2.91 -0.02 5.17 15 22 H 0.09 3.28 8.14 -2.38 -0.02 3.26 15 23 H 0.08 3.32 8.14 -2.39 -0.02 3.30 15 24 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 15 25 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 15 26 H 0.26 15.53 8.31 -92.71 -0.77 14.76 15 Total: -1.00 -74.69 233.75 3.53 -71.16 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.34 Total: 6.61 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 4.07 Total: -21.72 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -2.90 Total: -102.80 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -74.69 3.53 -71.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013600.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.918 kcal (2) G-P(sol) polarization free energy of solvation -74.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds