Wall clock time and date at job start Mon Mar 30 2020 01:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31159 * 1 3 3 Si 1.86794 * 119.99594 * 2 1 4 4 H 1.48501 * 109.47014 * 271.53097 * 3 2 1 5 5 H 1.48501 * 109.47255 * 31.53071 * 3 2 1 6 6 H 1.48501 * 109.47190 * 151.53179 * 3 2 1 7 7 C 1.39593 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00154 * 343.98533 * 7 2 1 9 9 C 1.41281 * 119.99961 * 163.98870 * 7 2 1 10 10 C 1.41748 * 126.56733 * 341.45749 * 9 7 2 11 11 N 1.30231 * 108.19885 * 179.70542 * 10 9 7 12 12 N 1.39787 * 109.40621 * 359.78443 * 11 10 9 13 13 C 1.34847 * 108.93199 * 0.67638 * 12 11 10 14 14 O 1.35513 * 112.23009 * 179.19406 * 13 12 11 15 15 C 1.43975 * 108.10157 * 18.40412 * 14 13 12 16 16 C 1.47542 * 143.03613 * 180.86409 * 12 11 10 17 17 H 0.96997 * 120.00575 * 0.02562 * 1 2 3 18 18 H 1.07994 * 125.90111 * 359.68400 * 10 9 7 19 19 H 1.09000 * 110.92318 * 91.74642 * 15 14 13 20 20 H 1.09001 * 110.91526 * 215.33239 * 15 14 13 21 21 H 1.09005 * 110.84494 * 46.39079 * 16 12 11 22 22 H 1.08994 * 111.02361 * 282.85295 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 14 2.2454 1.6177 0.0000 4 1 2.4605 2.0651 -1.3996 5 1 1.4594 2.6431 0.7322 6 1 3.5589 1.4312 0.6674 7 6 2.0096 -1.2089 0.0005 8 1 1.5011 -2.1260 0.2590 9 6 3.3813 -1.2327 -0.3369 10 6 4.0966 -0.2282 -1.0360 11 7 5.3357 -0.6135 -1.1464 12 7 5.4908 -1.8604 -0.5338 13 6 4.2992 -2.2582 -0.0436 14 8 4.3699 -3.4733 0.5522 15 6 5.7519 -3.7463 0.8491 16 6 6.4847 -2.9054 -0.2224 17 1 -0.4851 0.8400 -0.0004 18 1 3.6850 0.6966 -1.4123 19 1 6.0088 -3.4071 1.8527 20 1 5.9733 -4.8070 0.7305 21 1 7.3950 -2.4657 0.1853 22 1 6.7076 -3.5079 -1.1028 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261044856.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:13 Heat of formation + Delta-G solvation = 42.339692 kcal Electronic energy + Delta-G solvation = -10558.615085 eV Core-core repulsion = 8502.003247 eV Total energy + Delta-G solvation = -2056.611838 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.64250 -39.21134 -35.42247 -33.74214 -31.06300 -30.18805 -26.18067 -24.42169 -22.44070 -21.60812 -19.23662 -18.17501 -17.28755 -16.53655 -15.96985 -15.79593 -15.12808 -14.79744 -14.38231 -14.04517 -13.02421 -12.84307 -12.79192 -12.64814 -12.05135 -11.66127 -11.23728 -11.08181 -9.78855 -9.30565 -8.63745 -6.10805 0.91369 1.26233 1.39647 1.45124 1.53541 1.85390 2.23099 2.46730 3.23335 3.38961 3.91060 4.00134 4.24016 4.42534 4.62205 4.69469 4.87618 5.13452 5.40791 5.74057 6.25948 6.46672 6.71887 6.89237 7.13275 8.49473 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.066107 B = 0.016110 C = 0.013669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.454757 B = 1737.677690 C = 2047.876583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.038 3.962 3 Si 0.959 3.041 4 H -0.244 1.244 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.469 4.469 8 H 0.039 0.961 9 C -0.060 4.060 10 C -0.020 4.020 11 N -0.282 5.282 12 N -0.422 5.422 13 C 0.088 3.912 14 O -0.308 6.308 15 C 0.038 3.962 16 C 0.099 3.901 17 H 0.286 0.714 18 H 0.184 0.816 19 H 0.095 0.905 20 H 0.160 0.840 21 H 0.127 0.873 22 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.250 -2.809 0.981 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.170 4.170 3 Si 0.783 3.217 4 H -0.170 1.170 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.503 4.503 8 H 0.057 0.943 9 C -0.071 4.071 10 C -0.201 4.201 11 N -0.110 5.110 12 N -0.222 5.222 13 C -0.079 4.079 14 O -0.217 6.217 15 C -0.038 4.038 16 C -0.020 4.020 17 H 0.096 0.904 18 H 0.200 0.800 19 H 0.113 0.887 20 H 0.177 0.823 21 H 0.145 0.855 22 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.133 -2.636 0.596 13.408 hybrid contribution -0.960 0.220 0.355 1.047 sum 12.172 -2.415 0.951 12.446 Atomic orbital electron populations 1.69849 1.08769 1.30415 1.42684 1.26492 0.95408 1.03469 0.91678 0.85707 0.79026 0.76889 0.80103 1.16980 1.20262 1.18114 1.18338 0.92071 0.95005 1.44865 0.94261 1.17214 0.93720 0.91288 1.04887 1.23719 0.91463 1.01283 1.03664 1.76406 1.19262 0.93997 1.21360 1.50168 1.09342 1.15671 1.46989 1.21106 0.90356 0.90349 1.06051 1.86821 1.29331 1.28946 1.76571 1.24691 0.76600 1.03613 0.98850 1.23415 0.92101 0.85985 1.00533 0.90381 0.79971 0.88711 0.82284 0.85538 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.41 13.94 21.78 0.30 -52.11 14 2 C 0.04 2.16 5.50 85.12 0.47 2.63 14 3 Si 0.96 43.75 24.51 68.60 1.68 45.43 14 4 H -0.24 -10.08 6.68 99.48 0.66 -9.42 14 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 14 6 H -0.26 -11.88 6.54 99.48 0.65 -11.23 14 7 C -0.47 -28.83 9.90 23.35 0.23 -28.60 14 8 H 0.04 2.65 8.06 -2.91 -0.02 2.63 14 9 C -0.06 -3.36 5.52 -21.06 -0.12 -3.48 14 10 C -0.02 -0.99 9.24 85.80 0.79 -0.19 14 11 N -0.28 -13.25 12.59 -56.08 -0.71 -13.96 14 12 N -0.42 -18.03 4.97 -451.20 -2.24 -20.27 14 13 C 0.09 4.38 8.39 84.84 0.71 5.09 14 14 O -0.31 -13.14 11.17 -88.16 -0.98 -14.12 14 15 C 0.04 0.95 8.10 72.55 0.59 1.54 14 16 C 0.10 2.62 8.11 86.75 0.70 3.32 14 17 H 0.29 15.24 8.30 -92.71 -0.77 14.47 14 18 H 0.18 8.49 4.24 -2.91 -0.01 8.48 14 19 H 0.09 2.07 8.14 -2.39 -0.02 2.05 14 20 H 0.16 2.43 8.14 -2.39 -0.02 2.41 14 21 H 0.13 2.50 8.14 -2.38 -0.02 2.48 14 22 H 0.11 2.41 8.14 -2.39 -0.02 2.39 14 Total: -1.00 -74.19 195.42 2.57 -71.62 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.14 Total: 3.10 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 3.38 Total: -19.69 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -2.64 Total: -86.34 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.98 Total: -14.12 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.68 Total: 45.43 kcal Total: -74.19 2.57 -71.62 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261044856.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.959 kcal (2) G-P(sol) polarization free energy of solvation -74.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds