Wall clock time and date at job start Mon Mar 30 2020 02:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36161 * 125.74599 * 2 1 4 4 C 1.35979 * 109.05231 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.95382 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.47329 * 90.00138 * 5 4 3 7 7 C 1.39301 * 108.08797 * 359.97438 * 4 3 2 8 8 C 1.38031 * 125.73956 * 179.68770 * 2 1 3 9 9 C 1.39945 * 126.35690 * 0.02562 * 8 2 1 10 10 H 1.08008 * 120.00023 * 341.04344 * 9 8 2 11 11 C 1.40065 * 120.00404 * 161.03901 * 9 8 2 12 12 N 1.30861 * 120.00212 * 163.53386 * 11 9 8 13 13 Si 1.86799 * 119.99682 * 343.53541 * 11 9 8 14 14 H 1.48501 * 109.47066 * 92.02727 * 13 11 9 15 15 H 1.48497 * 109.46993 * 212.02515 * 13 11 9 16 16 H 1.48504 * 109.47161 * 332.02225 * 13 11 9 17 17 H 1.08994 * 109.47018 * 90.02408 * 1 2 3 18 18 H 1.09006 * 109.46824 * 330.03004 * 1 2 3 19 19 H 1.08997 * 109.47432 * 210.02609 * 1 2 3 20 20 H 1.07997 * 125.47861 * 359.95984 * 3 2 1 21 21 H 1.09006 * 109.47126 * 209.99624 * 5 4 3 22 22 H 1.09004 * 109.47365 * 329.99671 * 5 4 3 23 23 H 1.00897 * 110.99738 * 56.03691 * 6 5 4 24 24 H 1.00893 * 111.00231 * 180.02562 * 6 5 4 25 25 H 1.07999 * 126.47056 * 180.02562 * 7 4 3 26 26 H 0.96994 * 119.99556 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2604 1.1051 0.0000 4 6 3.5629 0.7145 0.0006 5 6 4.7608 1.6288 0.0002 6 7 5.1498 1.9269 1.3851 7 6 3.5968 -0.6781 0.0015 8 6 2.2712 -1.1204 0.0061 9 6 1.8410 -2.4520 0.0129 10 1 0.8331 -2.6924 0.3176 11 6 2.7174 -3.4732 -0.3756 12 7 2.4476 -4.7174 -0.0730 13 14 4.2715 -3.0589 -1.3257 14 1 5.3938 -2.8558 -0.3747 15 1 4.6002 -4.1754 -2.2481 16 1 4.0559 -1.8163 -2.1098 17 1 -0.3633 -0.0004 -1.0276 18 1 -0.3633 0.8903 0.5134 19 1 -0.3634 -0.8897 0.5142 20 1 1.9128 2.1276 -0.0006 21 1 5.5898 1.1414 -0.5130 22 1 4.5098 2.5564 -0.5144 23 1 5.3251 1.0783 1.9020 24 1 5.9513 2.5391 1.4118 25 1 4.4807 -1.2987 0.0026 26 1 3.0548 -5.4244 -0.3418 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261104821.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:29 Heat of formation + Delta-G solvation = 15.487438 kcal Electronic energy + Delta-G solvation = -10622.915737 eV Core-core repulsion = 8700.972592 eV Total energy + Delta-G solvation = -1921.943145 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.30301 -35.86472 -35.30916 -32.73235 -31.08808 -27.57997 -26.24624 -24.48146 -21.51220 -19.87994 -18.72266 -17.49908 -16.44173 -16.09960 -15.71753 -15.41156 -15.13019 -14.11044 -13.99951 -13.59328 -13.22976 -13.08590 -12.77733 -12.58662 -12.32890 -11.64055 -11.48110 -11.09490 -9.54350 -8.98901 -8.93088 -8.80645 -6.26367 1.20132 1.32722 1.52780 1.75220 2.20026 2.26727 2.60637 3.21952 4.05653 4.19978 4.49053 4.56697 4.57165 4.67076 4.75497 4.92685 5.00688 5.17741 5.58328 5.71240 5.97199 6.26529 6.32457 6.55269 6.75828 6.84777 7.04793 7.26657 8.28521 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.037337 B = 0.018390 C = 0.013408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.743685 B = 1522.192903 C = 2087.819022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.485 5.485 3 C -0.076 4.076 4 C -0.154 4.154 5 C 0.143 3.857 6 N -0.848 5.848 7 C -0.363 4.363 8 C 0.188 3.812 9 C -0.483 4.483 10 H 0.058 0.942 11 C 0.058 3.942 12 N -0.863 5.863 13 Si 0.977 3.023 14 H -0.272 1.272 15 H -0.287 1.287 16 H -0.256 1.256 17 H 0.068 0.932 18 H 0.098 0.902 19 H 0.063 0.937 20 H 0.167 0.833 21 H 0.020 0.980 22 H 0.083 0.917 23 H 0.338 0.662 24 H 0.347 0.653 25 H 0.100 0.900 26 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 9.260 -1.326 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.167 5.167 3 C -0.201 4.201 4 C -0.161 4.161 5 C 0.013 3.987 6 N -0.378 5.378 7 C -0.386 4.386 8 C 0.076 3.924 9 C -0.518 4.518 10 H 0.076 0.924 11 C -0.156 4.156 12 N -0.492 5.492 13 Si 0.804 3.196 14 H -0.199 1.199 15 H -0.214 1.214 16 H -0.180 1.180 17 H 0.087 0.913 18 H 0.116 0.884 19 H 0.082 0.918 20 H 0.184 0.816 21 H 0.038 0.962 22 H 0.101 0.899 23 H 0.150 0.850 24 H 0.161 0.839 25 H 0.117 0.883 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.335 9.417 -1.265 9.595 hybrid contribution 1.243 -0.986 -0.410 1.638 sum 2.578 8.431 -1.674 8.974 Atomic orbital electron populations 1.21825 0.77196 1.03580 1.02759 1.44218 1.06183 1.05521 1.60808 1.21497 0.89679 0.90936 1.17985 1.19119 0.94226 0.92834 1.09916 1.19938 0.92597 0.96630 0.89551 1.58722 1.44012 1.21485 1.13590 1.20661 0.93997 0.95031 1.28910 1.18168 0.89065 0.86730 0.98438 1.18254 1.00479 0.88863 1.44158 0.92427 1.26386 1.01221 0.93846 0.94142 1.69674 1.39049 1.01664 1.38857 0.85344 0.77844 0.77506 0.78900 1.19901 1.21430 1.17997 0.91309 0.88376 0.91832 0.81559 0.96217 0.89916 0.84960 0.83912 0.88258 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.11 10.93 127.77 1.40 4.51 15 2 N -0.49 -22.14 3.19 -538.14 -1.72 -23.85 15 3 C -0.08 -3.18 11.33 83.50 0.95 -2.23 15 4 C -0.15 -6.77 5.61 -20.14 -0.11 -6.88 15 5 C 0.14 4.97 7.26 85.55 0.62 5.59 15 6 N -0.85 -25.98 9.61 -189.99 -1.83 -27.80 15 7 C -0.36 -18.63 8.07 22.89 0.18 -18.44 15 8 C 0.19 10.05 6.25 38.94 0.24 10.29 15 9 C -0.48 -27.95 9.48 23.13 0.22 -27.73 15 10 H 0.06 3.48 7.34 -2.91 -0.02 3.46 15 11 C 0.06 3.24 5.50 85.28 0.47 3.71 15 12 N -0.86 -49.26 13.93 21.86 0.30 -48.96 15 13 Si 0.98 46.72 24.52 68.60 1.68 48.40 15 14 H -0.27 -12.72 6.70 99.48 0.67 -12.05 15 15 H -0.29 -12.79 7.11 99.48 0.71 -12.08 15 16 H -0.26 -12.60 6.56 99.48 0.65 -11.95 15 17 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 18 H 0.10 2.71 8.14 -2.38 -0.02 2.70 15 19 H 0.06 2.38 7.28 -2.39 -0.02 2.36 15 20 H 0.17 5.73 8.06 -2.91 -0.02 5.71 15 21 H 0.02 0.68 8.14 -2.38 -0.02 0.66 15 22 H 0.08 2.50 8.14 -2.38 -0.02 2.49 15 23 H 0.34 10.93 8.98 -89.70 -0.81 10.12 15 24 H 0.35 8.13 9.08 -89.70 -0.81 7.32 15 25 H 0.10 5.15 4.25 -2.91 -0.01 5.14 15 26 H 0.29 15.02 8.30 -92.71 -0.77 14.25 15 Total: -1.00 -64.99 221.91 1.90 -63.09 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.52 Total: 20.32 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 3.97 Total: -31.20 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -3.24 Total: -100.61 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.68 Total: 48.40 kcal Total: -64.99 1.90 -63.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104821.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.578 kcal (2) G-P(sol) polarization free energy of solvation -64.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds