Wall clock time and date at job start Mon Mar 30 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48502 * 109.46982 * 270.00291 * 3 2 1 5 5 H 1.48506 * 109.47015 * 30.00294 * 3 2 1 6 6 H 1.48496 * 109.46826 * 150.00520 * 3 2 1 7 7 C 1.37874 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00427 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47581 * 180.02562 * 9 7 2 11 11 C 1.39042 * 120.00503 * 180.02562 * 10 9 7 12 12 C 1.39672 * 120.52315 * 359.97438 * 11 10 9 13 13 N 1.32231 * 118.62402 * 180.02562 * 12 11 10 14 14 C 1.32174 * 119.59473 * 359.97438 * 13 12 11 15 15 N 1.31821 * 121.06578 * 0.02562 * 14 13 12 16 16 N 1.28734 * 121.47402 * 359.97438 * 15 14 13 17 17 H 0.97000 * 120.00404 * 359.97438 * 1 2 3 18 18 H 1.09005 * 109.47317 * 59.99801 * 9 7 2 19 19 H 1.09001 * 109.47297 * 300.00787 * 9 7 2 20 20 H 0.97003 * 119.99494 * 0.02562 * 10 9 7 21 21 H 1.07993 * 120.68671 * 0.02562 * 12 11 10 22 22 H 1.08003 * 119.46619 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7397 -4.9236 -0.0011 12 6 0.3689 -5.1914 -0.0011 13 7 -0.0303 -6.4520 -0.0011 14 6 0.8684 -7.4213 -0.0016 15 7 2.1589 -7.1524 -0.0016 16 7 2.5929 -5.9404 -0.0016 17 1 -0.4851 0.8400 0.0004 18 1 0.6240 -2.5567 -0.8903 19 1 0.6247 -2.5571 0.8896 20 1 3.1567 -3.4353 -0.0002 21 1 -0.3501 -4.3856 -0.0011 22 1 0.5401 -8.4502 -0.0020 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111139.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:50 Heat of formation + Delta-G solvation = 50.169072 kcal Electronic energy + Delta-G solvation = -9985.239334 eV Core-core repulsion = 7961.259754 eV Total energy + Delta-G solvation = -2023.979580 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.071 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.57427 -37.71616 -35.79804 -34.86642 -32.17382 -28.94235 -26.77561 -25.49061 -23.83665 -20.17003 -18.72923 -18.20532 -17.66619 -16.71996 -16.71788 -15.36663 -14.85451 -14.77457 -14.02824 -13.36819 -12.93910 -12.87868 -12.67122 -12.65285 -12.20148 -11.99687 -11.50859 -10.70358 -10.22244 -9.03797 -8.32737 -6.45543 -0.40377 0.06270 1.44460 1.45328 1.55672 2.05812 2.40950 2.64144 2.92986 3.04384 3.08037 3.60636 3.94752 4.44335 4.83349 5.06230 5.19469 5.46261 5.77674 5.79776 6.18759 6.52727 6.77039 7.25755 7.61175 8.78135 Molecular weight = 180.07amu Principal moments of inertia in cm(-1) A = 0.109138 B = 0.008960 C = 0.008317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 256.493906 B = 3124.383064 C = 3365.733547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.018 3.982 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.561 4.561 8 H 0.072 0.928 9 C 0.262 3.738 10 N -0.678 5.678 11 C 0.288 3.712 12 C 0.070 3.930 13 N -0.442 5.442 14 C 0.149 3.851 15 N -0.256 5.256 16 N -0.298 5.298 17 H 0.271 0.729 18 H 0.017 0.983 19 H 0.017 0.983 20 H 0.408 0.592 21 H 0.186 0.814 22 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 -6.490 -0.002 6.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.599 4.599 8 H 0.090 0.910 9 C 0.140 3.860 10 N -0.307 5.307 11 C 0.040 3.960 12 C -0.117 4.117 13 N -0.160 5.160 14 C -0.144 4.144 15 N -0.101 5.101 16 N -0.159 5.159 17 H 0.080 0.920 18 H 0.035 0.965 19 H 0.035 0.965 20 H 0.244 0.756 21 H 0.203 0.797 22 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.217 -7.060 0.002 7.164 hybrid contribution -0.055 1.634 -0.009 1.635 sum 1.161 -5.426 -0.007 5.549 Atomic orbital electron populations 1.70021 1.07476 1.28689 1.49523 1.25759 0.95778 1.02946 0.93866 0.85320 0.78505 0.77984 0.78462 1.19861 1.20676 1.18939 1.21477 0.94145 0.90832 1.53398 0.90980 1.19030 0.88413 0.82521 0.96073 1.45115 1.10959 1.00284 1.74365 1.21050 0.93330 0.89387 0.92252 1.23830 0.93797 0.95943 0.98176 1.68897 1.39201 0.99922 1.08000 1.26566 0.86239 1.01843 0.99704 1.73185 1.17509 1.11120 1.08277 1.73597 1.29851 0.94567 1.17935 0.92021 0.96527 0.96528 0.75592 0.79671 0.74086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.59 13.29 21.45 0.28 -49.31 14 2 C 0.02 0.90 5.46 84.65 0.46 1.36 14 3 Si 0.97 40.22 29.54 68.60 2.03 42.25 14 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 14 5 H -0.28 -11.47 7.11 99.48 0.71 -10.76 14 6 H -0.27 -10.60 7.11 99.48 0.71 -9.89 14 7 C -0.56 -28.14 9.28 25.60 0.24 -27.90 14 8 H 0.07 3.46 7.60 -2.91 -0.02 3.44 14 9 C 0.26 12.09 4.69 85.63 0.40 12.49 14 10 N -0.68 -27.13 5.72 -348.04 -1.99 -29.12 14 11 C 0.29 10.96 7.77 133.08 1.03 11.99 14 12 C 0.07 2.46 10.58 84.98 0.90 3.36 14 13 N -0.44 -14.21 10.53 -198.97 -2.10 -16.31 14 14 C 0.15 4.30 12.38 180.76 2.24 6.54 14 15 N -0.26 -8.78 11.55 -61.25 -0.71 -9.49 14 16 N -0.30 -11.37 11.66 -54.85 -0.64 -12.01 14 17 H 0.27 13.79 8.31 -92.71 -0.77 13.02 14 18 H 0.02 0.82 7.98 -2.38 -0.02 0.80 14 19 H 0.02 0.82 7.98 -2.39 -0.02 0.80 14 20 H 0.41 15.60 8.45 -92.71 -0.78 14.82 14 21 H 0.19 6.32 6.87 -2.91 -0.02 6.30 14 22 H 0.24 4.51 8.06 -2.91 -0.02 4.48 14 Total: -1.00 -56.08 208.99 2.61 -53.47 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.46 Total: 12.68 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 5.27 Total: 7.84 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -5.15 Total: -116.23 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -56.08 2.61 -53.47 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111139.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.635 kcal (2) G-P(sol) polarization free energy of solvation -56.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds