Wall clock time and date at job start Mon Mar 30 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00334 * 2 1 4 4 H 1.48492 * 109.47639 * 240.00708 * 3 2 1 5 5 H 1.48506 * 109.46754 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47161 * 120.00084 * 3 2 1 7 7 C 1.37878 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00120 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00047 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47386 * 300.00482 * 9 7 2 11 11 N 1.46894 * 109.46955 * 60.00447 * 9 7 2 12 12 C 1.50702 * 109.46930 * 180.02562 * 9 7 2 13 13 C 1.38759 * 120.44038 * 125.00594 * 12 9 7 14 14 N 1.32431 * 118.73036 * 180.29834 * 13 12 9 15 15 C 1.32048 * 119.53035 * 359.44269 * 14 13 12 16 16 N 1.31984 * 120.86648 * 0.56821 * 15 14 13 17 17 N 1.28740 * 121.36119 * 359.71033 * 16 15 14 18 18 H 0.96993 * 120.00054 * 359.97438 * 1 2 3 19 19 H 1.00902 * 111.00521 * 296.04311 * 11 9 7 20 20 H 1.00906 * 111.00184 * 59.99852 * 11 9 7 21 21 H 1.08002 * 120.62983 * 0.02562 * 13 12 9 22 22 H 1.07994 * 119.56723 * 180.25848 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4060 -2.5767 -1.1997 12 6 2.2302 -3.6446 -0.0005 13 6 2.1654 -4.6249 0.9794 14 7 3.0466 -5.6131 0.9505 15 6 3.9530 -5.6490 -0.0091 16 7 3.9989 -4.7074 -0.9328 17 7 3.1626 -3.7287 -0.9340 18 1 -0.4850 0.8400 0.0004 19 1 -0.3013 -1.8572 -1.1908 20 1 0.9638 -2.5251 -2.0390 21 1 1.4135 -4.5804 1.7534 22 1 4.6692 -6.4569 -0.0357 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261124074.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:47 Heat of formation + Delta-G solvation = 44.872558 kcal Electronic energy + Delta-G solvation = -10317.920006 eV Core-core repulsion = 8293.710752 eV Total energy + Delta-G solvation = -2024.209254 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.071 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.66400 -37.14000 -35.78167 -34.08362 -32.18789 -28.30050 -26.84584 -26.10700 -22.93086 -19.67019 -18.39853 -18.33433 -17.30991 -16.45301 -16.17807 -14.94267 -14.80765 -14.70807 -13.68105 -13.19643 -12.95642 -12.82917 -12.59101 -12.50041 -12.03283 -11.74568 -10.99020 -10.74419 -10.19885 -9.30821 -8.18555 -6.40384 -0.37833 -0.13194 1.38736 1.40869 1.48249 2.35149 2.62005 2.85416 3.03039 3.07390 3.24668 3.96516 4.25389 4.49617 4.61325 5.02410 5.39059 5.60943 5.87688 5.98406 6.51995 6.79666 7.02348 7.33198 7.57632 8.78355 Molecular weight = 180.07amu Principal moments of inertia in cm(-1) A = 0.064628 B = 0.012745 C = 0.011824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.141644 B = 2196.347838 C = 2367.513393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.032 3.968 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.560 4.560 8 H 0.040 0.960 9 C 0.262 3.738 10 H 0.054 0.946 11 N -0.839 5.839 12 C 0.055 3.945 13 C 0.127 3.873 14 N -0.473 5.473 15 C 0.206 3.794 16 N -0.309 5.309 17 N -0.212 5.212 18 H 0.271 0.729 19 H 0.354 0.646 20 H 0.320 0.680 21 H 0.209 0.791 22 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 -6.159 1.923 7.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.170 4.170 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.600 4.600 8 H 0.059 0.941 9 C 0.149 3.851 10 H 0.072 0.928 11 N -0.368 5.368 12 C -0.094 4.094 13 C -0.050 4.050 14 N -0.193 5.193 15 C -0.084 4.084 16 N -0.154 5.154 17 N -0.062 5.062 18 H 0.081 0.919 19 H 0.170 0.830 20 H 0.129 0.871 21 H 0.226 0.774 22 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 3.558 -6.881 1.438 7.879 hybrid contribution 0.186 1.989 0.391 2.036 sum 3.744 -4.892 1.828 6.426 Atomic orbital electron populations 1.69767 1.06518 1.28393 1.50036 1.25571 0.95767 1.01886 0.93745 0.85641 0.78478 0.79204 0.78468 1.20463 1.20159 1.20061 1.21814 0.93059 0.92155 1.52970 0.94125 1.17777 0.87969 0.86771 0.92561 0.92824 1.59432 1.17970 1.55592 1.03845 1.24170 0.95533 0.97244 0.92436 1.24447 0.95740 0.87797 0.97058 1.69119 1.03605 1.23208 1.23352 1.27044 0.96096 0.98252 0.87056 1.73616 1.18093 1.00423 1.23277 1.73591 0.99540 1.13033 1.20065 0.91924 0.83020 0.87119 0.77402 0.73721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.64 11.54 21.45 0.25 -47.39 14 2 C 0.03 1.65 5.38 84.66 0.46 2.11 14 3 Si 0.96 42.22 29.54 68.60 2.03 44.25 14 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 14 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 14 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 14 7 C -0.56 -29.60 8.55 25.60 0.22 -29.38 14 8 H 0.04 2.25 7.70 -2.91 -0.02 2.23 14 9 C 0.26 12.43 3.06 43.43 0.13 12.56 14 10 H 0.05 2.60 7.94 -2.39 -0.02 2.58 14 11 N -0.84 -39.19 9.18 -174.97 -1.61 -40.80 14 12 C 0.06 2.34 5.76 42.63 0.25 2.59 14 13 C 0.13 4.38 10.96 84.73 0.93 5.31 14 14 N -0.47 -15.02 10.54 -199.54 -2.10 -17.12 14 15 C 0.21 6.23 12.39 180.75 2.24 8.47 14 16 N -0.31 -11.81 11.57 -61.23 -0.71 -12.52 14 17 N -0.21 -9.39 11.28 -47.40 -0.53 -9.93 14 18 H 0.27 13.58 8.31 -92.71 -0.77 12.81 14 19 H 0.35 17.39 7.08 -89.69 -0.63 16.75 14 20 H 0.32 15.13 8.96 -89.69 -0.80 14.33 14 21 H 0.21 5.75 8.01 -2.91 -0.02 5.73 14 22 H 0.25 4.72 8.06 -2.91 -0.02 4.70 14 Total: -1.00 -58.21 207.10 1.37 -56.84 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.18 Total: 25.01 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 4.22 Total: 1.65 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -4.70 Total: -127.76 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -58.21 1.37 -56.84 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124074.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.714 kcal (2) G-P(sol) polarization free energy of solvation -58.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds