Wall clock time and date at job start Mon Mar 30 2020 01:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38754 * 120.43988 * 124.72383 * 12 9 7 14 14 N 1.32430 * 118.73464 * 179.71500 * 13 12 9 15 15 C 1.32060 * 119.52161 * 0.55374 * 14 13 12 16 16 N 1.31978 * 120.86962 * 359.71375 * 15 14 13 17 17 N 1.28739 * 121.36294 * 359.97438 * 16 15 14 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 20 20 H 1.00902 * 111.00206 * 63.95508 * 11 9 7 21 21 H 1.08004 * 120.63198 * 359.97438 * 13 12 9 22 22 H 1.08000 * 119.56266 * 179.68552 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 0.4063 -2.5823 1.1937 12 6 2.2302 -3.6447 -0.0104 13 6 2.1690 -4.6262 0.9685 14 7 3.0426 -5.6206 0.9285 15 6 3.9523 -5.6495 -0.0284 16 7 3.9983 -4.7037 -0.9478 17 7 3.1621 -3.7249 -0.9446 18 1 -0.4850 0.8401 -0.0004 19 1 0.9642 -2.5347 2.0330 20 1 -0.3010 -1.8627 1.1883 21 1 1.4204 -4.5822 1.7458 22 1 4.6683 -6.4575 -0.0587 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261124075.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:49 Heat of formation + Delta-G solvation = 48.226031 kcal Electronic energy + Delta-G solvation = -10329.939655 eV Core-core repulsion = 8305.875818 eV Total energy + Delta-G solvation = -2024.063836 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.071 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.68372 -37.22666 -35.83357 -34.12360 -32.15876 -28.40194 -26.59679 -26.16282 -22.96972 -19.63564 -18.66303 -18.33275 -17.16930 -16.51947 -16.10911 -15.05607 -14.73095 -14.70398 -13.68000 -13.26249 -12.97121 -12.86523 -12.57153 -12.50052 -12.10130 -11.77801 -11.03435 -10.63917 -10.20163 -9.35862 -8.20803 -6.42100 -0.37351 -0.15589 1.38463 1.41174 1.48484 2.34507 2.61418 2.77766 3.02461 3.09396 3.24264 4.07394 4.14979 4.52001 4.65753 5.11588 5.31825 5.59948 5.87407 5.94396 6.52039 6.75517 7.02075 7.31746 7.56689 8.77192 Molecular weight = 180.07amu Principal moments of inertia in cm(-1) A = 0.064626 B = 0.013064 C = 0.011564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.156629 B = 2142.780590 C = 2420.780712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.032 3.968 3 Si 0.958 3.042 4 H -0.281 1.281 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.041 0.959 9 C 0.265 3.735 10 H 0.036 0.964 11 N -0.834 5.834 12 C 0.049 3.951 13 C 0.138 3.862 14 N -0.476 5.476 15 C 0.204 3.796 16 N -0.309 5.309 17 N -0.223 5.223 18 H 0.272 0.728 19 H 0.325 0.675 20 H 0.359 0.641 21 H 0.211 0.789 22 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -6.033 3.423 7.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.170 4.170 3 Si 0.784 3.216 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.598 4.598 8 H 0.060 0.940 9 C 0.152 3.848 10 H 0.054 0.946 11 N -0.365 5.365 12 C -0.100 4.100 13 C -0.040 4.040 14 N -0.195 5.195 15 C -0.086 4.086 16 N -0.154 5.154 17 N -0.073 5.073 18 H 0.081 0.919 19 H 0.135 0.865 20 H 0.175 0.825 21 H 0.228 0.772 22 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 3.488 -6.760 2.359 7.964 hybrid contribution 0.155 1.976 0.549 2.057 sum 3.644 -4.784 2.908 6.680 Atomic orbital electron populations 1.69771 1.06546 1.28465 1.49908 1.25594 0.95798 1.01974 0.93633 0.85609 0.78452 0.79032 0.78505 1.20641 1.20109 1.19797 1.21747 0.93021 0.91854 1.53155 0.94040 1.17480 0.88138 0.86949 0.92236 0.94638 1.59362 1.17814 1.55921 1.03417 1.24153 0.95470 0.97738 0.92689 1.24394 0.95139 0.87376 0.97050 1.69175 1.03706 1.23456 1.23192 1.27072 0.96103 0.98265 0.87155 1.73621 1.18037 1.00356 1.23338 1.73561 0.99806 1.13381 1.20517 0.91860 0.86452 0.82471 0.77226 0.73635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.57 11.55 21.45 0.25 -47.32 14 2 C 0.03 1.64 5.38 84.66 0.46 2.09 14 3 Si 0.96 42.16 29.54 68.60 2.03 44.19 14 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 14 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 14 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 14 7 C -0.56 -29.56 8.55 25.60 0.22 -29.35 14 8 H 0.04 2.30 7.70 -2.91 -0.02 2.28 14 9 C 0.26 12.72 3.21 43.42 0.14 12.86 14 10 H 0.04 1.94 8.14 -2.39 -0.02 1.92 14 11 N -0.83 -34.99 8.01 -174.96 -1.40 -36.39 14 12 C 0.05 2.10 6.19 42.63 0.26 2.37 14 13 C 0.14 4.87 10.43 84.73 0.88 5.75 14 14 N -0.48 -15.40 10.54 -199.54 -2.10 -17.50 14 15 C 0.20 6.27 12.39 180.75 2.24 8.51 14 16 N -0.31 -12.00 11.56 -61.23 -0.71 -12.71 14 17 N -0.22 -10.12 11.31 -47.41 -0.54 -10.66 14 18 H 0.27 13.57 8.31 -92.70 -0.77 12.80 14 19 H 0.33 12.53 8.30 -89.69 -0.74 11.78 14 20 H 0.36 16.38 7.09 -89.69 -0.64 15.74 14 21 H 0.21 6.42 6.76 -2.91 -0.02 6.40 14 22 H 0.25 4.80 8.06 -2.91 -0.02 4.78 14 Total: -1.00 -57.96 204.32 1.61 -56.35 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.12 Total: 21.80 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 4.20 Total: 2.24 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -4.50 Total: -124.58 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -57.96 1.61 -56.35 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124075.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.576 kcal (2) G-P(sol) polarization free energy of solvation -57.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds