Wall clock time and date at job start Mon Mar 30 2020 02:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.39877 * 126.03804 * 90.02450 * 3 2 1 5 5 N 1.30837 * 108.20185 * 179.97438 * 4 3 2 6 6 N 1.40091 * 108.20322 * 0.02562 * 5 4 3 7 7 C 1.46494 * 126.03223 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47168 * 304.97117 * 7 6 5 9 9 H 1.07994 * 119.99899 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99745 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99853 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99757 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47354 * 90.00179 * 12 10 8 14 14 H 1.48503 * 109.47453 * 210.00283 * 12 10 8 15 15 H 1.48501 * 109.47391 * 330.00141 * 12 10 8 16 16 C 1.34943 * 107.92530 * 359.75682 * 6 5 4 17 17 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 18 18 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 19 19 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 20 20 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 21 21 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 22 22 H 1.08001 * 125.89772 * 359.95900 * 4 3 2 23 23 H 1.08999 * 109.47511 * 64.97358 * 7 6 5 24 24 H 1.09000 * 109.46965 * 184.97246 * 7 6 5 25 25 H 0.97006 * 119.99505 * 179.97438 * 11 10 8 26 26 H 1.08004 * 126.12516 * 180.23761 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3071 2.1965 1.1311 5 7 2.7227 3.3706 0.7303 6 7 2.7249 3.3794 -0.6705 7 6 3.1222 4.5013 -1.5247 8 6 2.3202 5.7225 -1.1553 9 1 1.5881 5.6685 -0.3632 10 6 2.5219 6.9091 -1.8279 11 7 3.4138 6.9750 -2.7921 12 14 1.5283 8.4230 -1.3695 13 1 2.2456 9.1857 -0.3164 14 1 1.3518 9.2811 -2.5686 15 1 0.1976 8.0060 -0.8591 16 6 2.3021 2.1699 -1.0941 17 1 -0.3635 -1.0276 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 1.8933 -0.5138 -0.8900 21 1 1.8933 -0.5139 0.8900 22 1 2.1953 1.8808 2.1579 23 1 4.1833 4.7072 -1.3839 24 1 2.9368 4.2468 -2.5682 25 1 3.5554 7.8098 -3.2656 26 1 2.1959 1.8566 -2.1222 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130469.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:49 Heat of formation + Delta-G solvation = 38.232277 kcal Electronic energy + Delta-G solvation = -10267.427836 eV Core-core repulsion = 8346.470981 eV Total energy + Delta-G solvation = -1920.956855 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.89328 -35.89997 -34.64797 -32.98804 -30.20405 -28.49539 -25.33313 -23.82063 -21.69876 -20.76386 -18.63981 -17.60879 -16.41883 -15.88499 -15.12053 -15.00259 -14.53649 -14.18073 -13.87928 -13.41006 -12.98350 -12.95505 -12.67033 -12.32120 -12.29299 -11.75316 -11.69323 -11.11277 -10.76738 -10.19942 -9.08061 -8.36443 -6.51056 1.23905 1.36016 1.37767 1.48900 1.99232 2.05561 2.33593 2.95201 3.96399 4.13721 4.37423 4.54054 4.61413 4.75069 4.90206 4.96999 5.11433 5.17088 5.28404 5.53027 5.53051 5.56785 5.79322 6.00795 6.34092 6.62894 7.09001 7.19513 8.71724 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.069524 B = 0.009534 C = 0.009288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.644285 B = 2936.225214 C = 3013.921891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.033 4.033 3 C -0.252 4.252 4 C 0.023 3.977 5 N -0.340 5.340 6 N -0.358 5.358 7 C 0.270 3.730 8 C -0.550 4.550 9 H 0.051 0.949 10 C 0.017 3.983 11 N -0.922 5.922 12 Si 0.974 3.026 13 H -0.272 1.272 14 H -0.269 1.269 15 H -0.272 1.272 16 C 0.033 3.967 17 H 0.073 0.927 18 H 0.045 0.955 19 H 0.040 0.960 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.203 0.797 23 H 0.016 0.984 24 H 0.052 0.948 25 H 0.273 0.727 26 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 -10.948 3.007 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.264 4.264 4 C -0.161 4.161 5 N -0.163 5.163 6 N -0.139 5.139 7 C 0.151 3.849 8 C -0.588 4.588 9 H 0.069 0.931 10 C -0.183 4.183 11 N -0.560 5.560 12 Si 0.798 3.202 13 H -0.198 1.198 14 H -0.194 1.194 15 H -0.197 1.197 16 C -0.115 4.115 17 H 0.092 0.908 18 H 0.064 0.936 19 H 0.059 0.941 20 H 0.093 0.907 21 H 0.099 0.901 22 H 0.220 0.780 23 H 0.034 0.966 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.867 -9.530 3.123 10.749 hybrid contribution -0.416 0.326 -0.266 0.592 sum -4.284 -9.205 2.856 10.547 Atomic orbital electron populations 1.21742 0.95304 1.01839 1.01118 1.19797 0.95293 0.88988 1.03037 1.20410 1.14840 1.00399 0.90783 1.24266 0.99913 0.90888 1.01067 1.77278 1.25163 1.22875 0.90991 1.49147 1.48754 1.11646 1.04371 1.19233 0.95251 0.82289 0.88167 1.21404 1.22309 0.95496 1.19580 0.93117 1.25786 0.96328 1.01838 0.94338 1.70003 1.34337 1.28549 1.23136 0.85309 0.78637 0.78064 0.78179 1.19773 1.19418 1.19652 1.22893 1.00988 0.86156 1.01432 0.90774 0.93589 0.94117 0.90748 0.90075 0.78038 0.96568 0.93047 0.91762 0.79710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.89 71.98 0.71 -2.36 15 2 C -0.03 -0.76 6.42 29.85 0.19 -0.57 15 3 C -0.25 -8.43 5.35 -20.14 -0.11 -8.54 15 4 C 0.02 0.86 11.96 85.24 1.02 1.88 15 5 N -0.34 -16.19 12.41 -57.02 -0.71 -16.89 15 6 N -0.36 -17.24 3.67 -351.81 -1.29 -18.53 15 7 C 0.27 14.57 6.26 85.64 0.54 15.11 15 8 C -0.55 -32.09 9.24 25.60 0.24 -31.85 15 9 H 0.05 3.08 7.81 -2.91 -0.02 3.05 15 10 C 0.02 0.99 5.46 84.66 0.46 1.45 15 11 N -0.92 -53.39 13.29 21.45 0.28 -53.10 15 12 Si 0.97 44.47 29.54 68.60 2.03 46.49 15 13 H -0.27 -12.16 7.11 99.48 0.71 -11.46 15 14 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 16 C 0.03 1.27 11.36 83.54 0.95 2.22 15 17 H 0.07 1.22 8.14 -2.39 -0.02 1.20 15 18 H 0.04 1.04 8.14 -2.39 -0.02 1.02 15 19 H 0.04 0.96 8.14 -2.39 -0.02 0.94 15 20 H 0.07 1.53 8.14 -2.39 -0.02 1.51 15 21 H 0.08 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.20 5.71 8.06 -2.91 -0.02 5.69 15 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 24 H 0.05 2.72 8.07 -2.39 -0.02 2.70 15 25 H 0.27 14.73 8.31 -92.70 -0.77 13.96 15 26 H 0.19 5.89 8.06 -2.91 -0.02 5.86 15 Total: -1.00 -65.63 235.33 5.46 -60.17 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.14 Total: 4.53 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 4.00 Total: -22.67 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -1.71 Total: -88.53 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.63 5.46 -60.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130469.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.404 kcal (2) G-P(sol) polarization free energy of solvation -65.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds