Wall clock time and date at job start Mon Mar 30 2020 01:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99669 * 2 1 4 4 H 1.48501 * 109.47314 * 239.99900 * 3 2 1 5 5 H 1.48500 * 109.47720 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46903 * 120.00515 * 3 2 1 7 7 C 1.37879 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99475 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99711 * 359.97438 * 7 2 1 10 10 C 1.50708 * 109.46532 * 179.97438 * 9 7 2 11 11 O 1.21349 * 119.99855 * 359.97438 * 10 9 7 12 12 C 1.46299 * 119.99673 * 180.02562 * 10 9 7 13 13 C 1.38831 * 126.92939 * 180.02562 * 12 10 9 14 14 C 1.39525 * 105.33028 * 179.97438 * 13 12 10 15 15 N 1.30923 * 107.94620 * 0.02562 * 14 13 12 16 16 N 1.28434 * 111.02058 * 359.97438 * 15 14 13 17 17 H 0.96997 * 125.21632 * 180.02562 * 16 15 14 18 18 H 0.97003 * 119.99747 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47003 * 60.00734 * 9 7 2 20 20 H 1.08995 * 109.47294 * 299.99644 * 9 7 2 21 21 H 1.08000 * 127.34125 * 359.95423 * 13 12 10 22 22 H 1.07998 * 126.02136 * 179.73278 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 8 3.4235 -3.4228 -0.0031 12 6 1.7427 -5.0239 -0.0026 13 6 2.5110 -6.1803 -0.0033 14 6 1.5943 -7.2322 -0.0033 15 7 0.3903 -6.7180 -0.0032 16 7 0.4374 -5.4345 -0.0026 17 1 -0.3339 -4.8464 -0.0021 18 1 -0.4850 0.8401 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 3.5887 -6.2508 -0.0040 22 1 1.8355 -8.2848 -0.0078 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261153240.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:39 Heat of formation + Delta-G solvation = 4.255086 kcal Electronic energy + Delta-G solvation = -10054.335817 eV Core-core repulsion = 7996.072506 eV Total energy + Delta-G solvation = -2058.263311 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.36910 -39.92490 -35.18847 -32.87938 -32.11852 -30.71107 -26.40688 -23.83955 -22.53548 -21.28560 -18.81790 -18.24968 -16.77250 -16.66841 -16.26190 -15.50470 -15.34125 -14.71187 -14.37200 -14.05936 -13.30199 -12.89702 -12.61948 -12.15816 -11.82830 -11.54443 -10.66430 -10.58586 -10.39731 -10.10905 -8.29600 -6.38146 0.03450 1.40140 1.41887 1.50626 1.62574 1.96245 2.00312 2.37840 3.06306 3.21319 3.83976 4.14932 4.48525 4.67781 4.91188 5.08071 5.15402 5.53736 5.66364 5.99227 6.07901 6.62902 6.73862 7.03620 7.31425 8.81882 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.092526 B = 0.010021 C = 0.009086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 302.543587 B = 2793.578079 C = 3080.978141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.059 0.941 9 C -0.023 4.023 10 C 0.427 3.573 11 O -0.479 6.479 12 C -0.077 4.077 13 C -0.171 4.171 14 C 0.000 4.000 15 N -0.285 5.285 16 N -0.363 5.363 17 H 0.455 0.545 18 H 0.268 0.732 19 H 0.051 0.949 20 H 0.051 0.949 21 H 0.172 0.828 22 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 -9.982 -0.008 10.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.059 4.059 10 C 0.305 3.695 11 O -0.353 6.353 12 C -0.204 4.204 13 C -0.199 4.199 14 C -0.176 4.176 15 N -0.120 5.120 16 N -0.081 5.081 17 H 0.302 0.698 18 H 0.077 0.923 19 H 0.069 0.931 20 H 0.069 0.931 21 H 0.190 0.810 22 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.094 -10.020 -0.009 10.021 hybrid contribution 0.618 1.497 0.001 1.620 sum 0.712 -8.523 -0.008 8.553 Atomic orbital electron populations 1.70006 1.07144 1.28294 1.50726 1.25780 0.95846 1.02793 0.94240 0.85527 0.78405 0.78312 0.79006 1.19641 1.20038 1.19648 1.21359 0.93874 0.91353 1.51927 0.92294 1.19500 0.95208 0.92051 0.99176 1.22131 0.90036 0.87759 0.69579 1.90419 1.19819 1.86940 1.38168 1.22640 0.86662 0.97076 1.13976 1.22695 1.01787 0.90199 1.05260 1.24224 0.86748 1.01980 1.04661 1.73136 1.26954 0.92282 1.19608 1.43797 1.07315 1.04927 1.52059 0.69819 0.92300 0.93083 0.93077 0.81028 0.75708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.52 13.29 21.45 0.28 -52.23 14 2 C 0.01 0.71 5.46 84.65 0.46 1.17 14 3 Si 0.96 44.06 29.54 68.60 2.03 46.09 14 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 14 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 14 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 14 7 C -0.55 -31.13 8.92 25.60 0.23 -30.90 14 8 H 0.06 3.47 6.75 -2.91 -0.02 3.45 14 9 C -0.02 -1.11 5.12 29.10 0.15 -0.96 14 10 C 0.43 18.89 7.11 27.79 0.20 19.09 14 11 O -0.48 -23.75 16.02 -3.24 -0.05 -23.80 14 12 C -0.08 -2.72 7.07 40.60 0.29 -2.43 14 13 C -0.17 -5.07 10.85 22.72 0.25 -4.83 14 14 C 0.00 0.00 12.02 85.14 1.02 1.02 14 15 N -0.29 -8.17 12.14 -57.21 -0.69 -8.87 14 16 N -0.36 -11.17 6.86 -48.23 -0.33 -11.50 14 17 H 0.45 12.46 8.78 -220.01 -1.93 10.53 14 18 H 0.27 14.39 8.31 -92.71 -0.77 13.62 14 19 H 0.05 2.52 8.14 -2.39 -0.02 2.50 14 20 H 0.05 2.52 8.14 -2.39 -0.02 2.50 14 21 H 0.17 4.55 8.06 -2.91 -0.02 4.53 14 22 H 0.23 3.38 8.06 -2.91 -0.02 3.35 14 Total: -1.00 -65.09 211.96 3.14 -61.94 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -0.69 Total: 6.22 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 2.59 Total: -17.85 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -0.74 Total: -72.60 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.05 Total: -23.80 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -65.09 3.14 -61.94 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153240.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.200 kcal (2) G-P(sol) polarization free energy of solvation -65.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds