Wall clock time and date at job start Mon Mar 30 2020 02:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46979 * 2 1 4 4 C 1.36419 * 126.55817 * 270.00293 * 3 2 1 5 5 C 1.50696 * 126.40217 * 359.97270 * 4 3 2 6 6 C 1.36215 * 107.19384 * 179.97438 * 4 3 2 7 7 N 1.32760 * 108.61995 * 359.75544 * 6 4 3 8 8 C 1.32986 * 109.22628 * 0.39875 * 7 6 4 9 9 C 1.39989 * 125.96506 * 179.86544 * 8 7 6 10 10 H 1.08002 * 120.00308 * 179.69590 * 9 8 7 11 11 C 1.40239 * 119.99695 * 359.41407 * 9 8 7 12 12 N 1.30684 * 120.00322 * 0.27882 * 11 9 8 13 13 Si 1.86803 * 119.99747 * 180.27707 * 11 9 8 14 14 H 1.48496 * 109.47491 * 60.00028 * 13 11 9 15 15 H 1.48498 * 109.47322 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46993 * 300.00134 * 13 11 9 17 17 H 1.09000 * 109.47206 * 60.00466 * 1 2 3 18 18 H 1.09004 * 109.46776 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.47578 * 299.99516 * 1 2 3 20 20 H 1.08997 * 109.47364 * 239.99982 * 2 1 3 21 21 H 1.08997 * 109.47030 * 120.00288 * 2 1 3 22 22 H 1.09010 * 109.47077 * 90.00522 * 5 4 3 23 23 H 1.08995 * 109.47464 * 210.00549 * 5 4 3 24 24 H 1.09001 * 109.47171 * 330.00969 * 5 4 3 25 25 H 1.07999 * 125.69135 * 180.02562 * 6 4 3 26 26 H 0.97005 * 120.00035 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2891 2.1473 -1.0958 5 6 2.1424 1.7308 -2.5366 6 6 2.7169 3.3591 -0.6441 7 7 2.7059 3.3447 0.6833 8 6 2.2908 2.1537 1.1049 9 6 2.1500 1.7575 2.4402 10 1 1.7986 0.7634 2.6743 11 6 2.4710 2.6493 3.4738 12 7 2.8963 3.8521 3.1905 13 14 2.2905 2.1179 5.2555 14 1 3.1613 0.9428 5.5123 15 1 2.6901 3.2352 6.1483 16 1 0.8759 1.7533 5.5224 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5137 0.8900 20 1 1.8934 -0.5138 -0.8899 21 1 1.8934 -0.5139 0.8899 22 1 1.1380 1.9727 -2.8843 23 1 2.8749 2.2615 -3.1447 24 1 2.3080 0.6569 -2.6230 25 1 3.0115 4.1940 -1.2627 26 1 3.1179 4.4690 3.9055 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261227503.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:43 Heat of formation + Delta-G solvation = 44.139941 kcal Electronic energy + Delta-G solvation = -10739.634572 eV Core-core repulsion = 8818.933893 eV Total energy + Delta-G solvation = -1920.700679 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.88457 -33.67209 -33.24891 -30.53620 -28.68575 -27.05504 -23.46665 -22.67308 -19.90583 -18.28445 -16.60637 -15.44053 -14.47734 -13.94965 -13.79947 -12.88443 -12.33367 -12.20124 -12.07520 -11.89906 -11.42439 -11.16585 -11.01687 -10.95309 -10.55255 -10.35358 -10.05229 -9.10394 -7.85898 -7.67809 -6.85304 -6.32539 -4.17442 3.09802 3.18641 3.20025 3.68009 4.06212 4.44466 4.77107 5.47298 5.61838 5.80654 5.89770 6.05674 6.07801 6.20237 6.32692 6.33405 6.53159 6.62126 6.70596 7.22648 7.39730 7.73151 8.22191 8.31703 8.66861 9.04400 9.42359 10.33169 10.60862 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.052543 B = 0.015096 C = 0.012168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.770033 B = 1854.326713 C = 2300.484006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.123 3.877 3 N -0.502 5.502 4 C -0.154 4.154 5 C -0.046 4.046 6 C -0.012 4.012 7 N -0.517 5.517 8 C 0.376 3.624 9 C -0.463 4.463 10 H 0.076 0.924 11 C 0.082 3.918 12 N -0.744 5.744 13 Si 0.909 3.091 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.268 1.268 17 H 0.051 0.949 18 H 0.056 0.944 19 H 0.064 0.936 20 H 0.063 0.937 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.131 0.869 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.621 -5.857 -3.208 7.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.002 4.002 3 N -0.193 5.193 4 C -0.265 4.265 5 C -0.104 4.104 6 C -0.165 4.165 7 N -0.238 5.238 8 C 0.133 3.867 9 C -0.502 4.502 10 H 0.094 0.906 11 C -0.142 4.142 12 N -0.369 5.369 13 Si 0.734 3.266 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.193 1.193 17 H 0.071 0.929 18 H 0.075 0.925 19 H 0.083 0.917 20 H 0.081 0.919 21 H 0.096 0.904 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.149 0.851 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.353 -5.094 -2.690 6.223 hybrid contribution -0.346 -0.923 0.206 1.007 sum -2.699 -6.017 -2.484 7.047 Atomic orbital electron populations 1.22118 0.96338 1.00969 1.02732 1.21188 0.94065 0.83141 1.01782 1.45305 1.56397 1.11051 1.06556 1.20465 1.21780 0.95773 0.88459 1.19758 0.99979 0.99210 0.91422 1.21930 1.05835 0.94944 0.93816 1.71267 1.26712 1.18637 1.07169 1.20192 0.94259 0.84819 0.87424 1.18039 1.44846 1.00303 0.87046 0.90635 1.25686 0.93719 0.94361 1.00389 1.70011 1.28964 1.04463 1.33498 0.86390 0.79365 0.78893 0.81971 1.19305 1.20399 1.19304 0.92946 0.92483 0.91728 0.91883 0.90441 0.93962 0.92465 0.94124 0.85108 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 10.24 37.16 0.38 -2.40 15 2 C 0.12 2.37 6.47 -4.04 -0.03 2.35 15 3 N -0.50 -12.37 2.81 -111.41 -0.31 -12.68 15 4 C -0.15 -3.65 6.98 -81.28 -0.57 -4.22 15 5 C -0.05 -0.82 10.17 36.00 0.37 -0.46 15 6 C -0.01 -0.32 11.77 -17.88 -0.21 -0.53 15 7 N -0.52 -15.60 9.41 -12.72 -0.12 -15.72 15 8 C 0.38 10.80 7.43 -155.60 -1.16 9.64 15 9 C -0.46 -12.88 9.00 -38.17 -0.34 -13.23 15 10 H 0.08 1.93 7.16 -52.49 -0.38 1.56 15 11 C 0.08 2.21 5.50 -17.29 -0.10 2.11 15 12 N -0.74 -21.38 11.90 55.56 0.66 -20.72 15 13 Si 0.91 19.56 29.56 -169.99 -5.03 14.53 15 14 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 16 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 17 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 18 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 19 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 20 H 0.06 1.07 7.18 -51.93 -0.37 0.70 15 21 H 0.08 1.47 7.38 -51.93 -0.38 1.09 15 22 H 0.04 0.71 8.14 -51.92 -0.42 0.29 15 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.04 0.67 7.20 -51.93 -0.37 0.29 15 25 H 0.13 3.07 8.06 -52.49 -0.42 2.65 15 26 H 0.27 7.10 8.29 -40.82 -0.34 6.76 15 LS Contribution 228.54 15.07 3.44 3.44 Total: -1.00 -32.19 228.54 -6.18 -38.37 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -3.18 Total: -0.48 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.65 Total: -6.74 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.23 Total: -49.13 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -32.19 -6.18 -38.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227503.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.511 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds