Wall clock time and date at job start Mon Mar 30 2020 02:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46979 * 2 1 4 4 C 1.36419 * 126.55817 * 270.00293 * 3 2 1 5 5 C 1.50696 * 126.40217 * 359.97270 * 4 3 2 6 6 C 1.36215 * 107.19384 * 179.97438 * 4 3 2 7 7 N 1.32760 * 108.61995 * 359.75544 * 6 4 3 8 8 C 1.32986 * 109.22628 * 0.39875 * 7 6 4 9 9 C 1.39989 * 125.96506 * 179.86544 * 8 7 6 10 10 H 1.08002 * 120.00308 * 179.69590 * 9 8 7 11 11 C 1.40239 * 119.99695 * 359.41407 * 9 8 7 12 12 N 1.30684 * 120.00322 * 0.27882 * 11 9 8 13 13 Si 1.86803 * 119.99747 * 180.27707 * 11 9 8 14 14 H 1.48496 * 109.47491 * 60.00028 * 13 11 9 15 15 H 1.48498 * 109.47322 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46993 * 300.00134 * 13 11 9 17 17 H 1.09000 * 109.47206 * 60.00466 * 1 2 3 18 18 H 1.09004 * 109.46776 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.47578 * 299.99516 * 1 2 3 20 20 H 1.08997 * 109.47364 * 239.99982 * 2 1 3 21 21 H 1.08997 * 109.47030 * 120.00288 * 2 1 3 22 22 H 1.09010 * 109.47077 * 90.00522 * 5 4 3 23 23 H 1.08995 * 109.47464 * 210.00549 * 5 4 3 24 24 H 1.09001 * 109.47171 * 330.00969 * 5 4 3 25 25 H 1.07999 * 125.69135 * 180.02562 * 6 4 3 26 26 H 0.97005 * 120.00035 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2891 2.1473 -1.0958 5 6 2.1424 1.7308 -2.5366 6 6 2.7169 3.3591 -0.6441 7 7 2.7059 3.3447 0.6833 8 6 2.2908 2.1537 1.1049 9 6 2.1500 1.7575 2.4402 10 1 1.7986 0.7634 2.6743 11 6 2.4710 2.6493 3.4738 12 7 2.8963 3.8521 3.1905 13 14 2.2905 2.1179 5.2555 14 1 3.1613 0.9428 5.5123 15 1 2.6901 3.2352 6.1483 16 1 0.8759 1.7533 5.5224 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5137 0.8900 20 1 1.8934 -0.5138 -0.8899 21 1 1.8934 -0.5139 0.8899 22 1 1.1380 1.9727 -2.8843 23 1 2.8749 2.2615 -3.1447 24 1 2.3080 0.6569 -2.6230 25 1 3.0115 4.1940 -1.2627 26 1 3.1179 4.4690 3.9055 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227503.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:43 Heat of formation + Delta-G solvation = 23.671211 kcal Electronic energy + Delta-G solvation = -10740.522163 eV Core-core repulsion = 8818.933893 eV Total energy + Delta-G solvation = -1921.588270 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.83058 -35.48644 -35.12984 -32.30333 -30.42291 -28.93933 -25.36013 -24.27059 -21.91256 -20.10265 -18.55038 -17.38451 -16.22364 -15.70023 -15.40936 -14.65601 -14.03401 -13.88682 -13.65650 -13.33864 -13.14133 -12.89219 -12.68032 -12.58393 -12.26454 -12.06595 -11.81635 -11.03671 -9.82297 -9.72212 -8.86014 -8.30326 -6.23249 1.38193 1.42918 1.56663 1.81342 2.27169 2.68060 2.76139 3.64801 4.00290 4.32675 4.36527 4.52756 4.63362 4.65493 4.82602 4.89669 4.93436 5.14247 5.20813 5.32095 5.45891 5.78113 6.27021 6.32318 6.72880 7.03976 7.44691 8.32655 8.66142 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.052543 B = 0.015096 C = 0.012168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.770033 B = 1854.326713 C = 2300.484006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.111 3.889 3 N -0.504 5.504 4 C -0.126 4.126 5 C -0.043 4.043 6 C -0.067 4.067 7 N -0.566 5.566 8 C 0.336 3.664 9 C -0.492 4.492 10 H 0.088 0.912 11 C 0.028 3.972 12 N -0.797 5.797 13 Si 0.994 3.006 14 H -0.257 1.257 15 H -0.274 1.274 16 H -0.258 1.258 17 H 0.052 0.948 18 H 0.099 0.901 19 H 0.036 0.964 20 H 0.095 0.905 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.145 0.855 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 -7.948 -3.784 9.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 N -0.193 5.193 4 C -0.239 4.239 5 C -0.101 4.101 6 C -0.218 4.218 7 N -0.288 5.288 8 C 0.091 3.909 9 C -0.531 4.531 10 H 0.106 0.894 11 C -0.190 4.190 12 N -0.423 5.423 13 Si 0.814 3.186 14 H -0.182 1.182 15 H -0.199 1.199 16 H -0.182 1.182 17 H 0.071 0.929 18 H 0.118 0.882 19 H 0.056 0.944 20 H 0.113 0.887 21 H 0.095 0.905 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.163 0.837 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.129 -7.216 -3.304 8.531 hybrid contribution -0.123 -0.323 0.191 0.395 sum -3.251 -7.539 -3.113 8.780 Atomic orbital electron populations 1.22029 0.94347 1.03331 1.01365 1.21606 0.95679 0.80519 1.03346 1.45661 1.55214 1.12727 1.05744 1.21365 1.17177 0.94516 0.90852 1.19917 1.01829 1.00939 0.87372 1.22360 1.08972 0.97230 0.93239 1.71110 1.27938 1.20408 1.09313 1.20521 0.95959 0.85550 0.88883 1.18471 1.45872 1.01216 0.87546 0.89434 1.26796 0.92647 0.94029 1.05521 1.70172 1.30787 1.06085 1.35267 0.85113 0.79793 0.78636 0.75080 1.18162 1.19852 1.18221 0.92903 0.88223 0.94442 0.88663 0.90522 0.91964 0.90489 0.91764 0.83743 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 10.24 71.98 0.74 -4.03 15 2 C 0.11 4.01 6.47 86.38 0.56 4.57 15 3 N -0.50 -24.42 2.81 -506.40 -1.42 -25.85 15 4 C -0.13 -5.84 6.98 41.37 0.29 -5.55 15 5 C -0.04 -1.38 10.17 71.23 0.72 -0.66 15 6 C -0.07 -3.62 11.77 84.08 0.99 -2.63 15 7 N -0.57 -35.39 9.41 -194.17 -1.83 -37.22 15 8 C 0.34 19.75 7.43 133.59 0.99 20.75 15 9 C -0.49 -27.92 9.00 23.18 0.21 -27.71 15 10 H 0.09 4.52 7.16 -2.91 -0.02 4.49 15 11 C 0.03 1.56 5.50 85.35 0.47 2.03 15 12 N -0.80 -47.54 11.90 21.88 0.26 -47.28 15 13 Si 0.99 40.56 29.56 68.60 2.03 42.59 15 14 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 15 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 16 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 17 H 0.05 1.63 8.14 -2.39 -0.02 1.61 15 18 H 0.10 2.26 8.14 -2.39 -0.02 2.24 15 19 H 0.04 1.36 8.14 -2.39 -0.02 1.34 15 20 H 0.10 2.82 7.18 -2.39 -0.02 2.81 15 21 H 0.08 2.77 7.38 -2.39 -0.02 2.76 15 22 H 0.06 1.83 8.14 -2.38 -0.02 1.81 15 23 H 0.08 2.22 8.14 -2.39 -0.02 2.20 15 24 H 0.06 1.80 7.20 -2.39 -0.02 1.78 15 25 H 0.15 6.95 8.06 -2.91 -0.02 6.93 15 26 H 0.27 14.93 8.29 -92.70 -0.77 14.16 15 Total: -1.00 -72.62 228.54 5.17 -67.45 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.16 Total: 13.53 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 4.97 Total: -13.23 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -2.99 Total: -110.35 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -72.62 5.17 -67.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227503.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.124 kcal (2) G-P(sol) polarization free energy of solvation -72.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds