Wall clock time and date at job start Mon Mar 30 2020 02:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.46990 * 2 1 4 4 C 1.36885 * 126.39769 * 264.97832 * 3 2 1 5 5 C 1.34668 * 106.81551 * 180.02562 * 4 3 2 6 6 N 1.34128 * 108.02356 * 359.77459 * 5 4 3 7 7 C 1.30500 * 109.25239 * 0.37167 * 6 5 4 8 8 C 1.50700 * 125.64623 * 179.89691 * 7 6 5 9 9 C 1.50702 * 109.46869 * 269.68927 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 H 1.08999 * 109.46628 * 179.97438 * 1 2 3 18 18 H 1.08996 * 109.47172 * 300.00082 * 1 2 3 19 19 H 1.09006 * 109.47049 * 60.00016 * 1 2 3 20 20 H 1.08996 * 109.47172 * 239.99918 * 2 1 3 21 21 H 1.08996 * 109.46963 * 119.99995 * 2 1 3 22 22 H 1.07993 * 126.59374 * 0.05107 * 4 3 2 23 23 H 1.08003 * 125.98642 * 180.02562 * 5 4 3 24 24 H 1.09004 * 109.47210 * 149.69220 * 8 7 6 25 25 H 1.08994 * 109.47551 * 29.68873 * 8 7 6 26 26 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3800 2.1149 -1.0976 5 6 2.7662 3.3241 -0.6479 6 7 2.6390 3.3303 0.6873 7 6 2.1962 2.1683 1.0828 8 6 1.9223 1.7724 2.5109 9 6 3.1651 1.1675 3.1116 10 1 4.0634 1.0790 2.5187 11 6 3.1570 0.7328 4.4201 12 7 2.0632 0.8410 5.1421 13 14 4.6997 -0.0099 5.1669 14 1 5.5146 1.0640 5.7897 15 1 4.3191 -1.0053 6.2012 16 1 5.4918 -0.6790 4.1038 17 1 -0.3632 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 1.8934 -0.5138 -0.8899 21 1 1.8934 -0.5138 0.8900 22 1 2.3592 1.7871 -2.1264 23 1 3.1133 4.1462 -1.2563 24 1 1.1137 1.0419 2.5368 25 1 1.6341 2.6539 3.0835 26 1 2.0574 0.5348 6.0626 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234503.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:42 Heat of formation + Delta-G solvation = 25.870968 kcal Electronic energy + Delta-G solvation = -10577.188563 eV Core-core repulsion = 8655.695682 eV Total energy + Delta-G solvation = -1921.492881 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.81025 -35.77454 -35.37478 -32.26041 -30.85381 -28.59027 -25.38907 -24.34922 -22.03695 -20.39862 -18.64648 -17.76863 -16.50233 -16.09463 -15.69892 -14.78559 -14.53283 -14.25177 -14.00104 -13.44405 -13.36501 -12.90128 -12.67285 -12.59226 -12.17444 -11.93387 -11.59107 -10.71467 -10.63266 -10.42874 -9.08561 -8.23032 -6.37209 1.30870 1.39818 1.42251 1.52237 2.11498 2.32290 2.47956 3.07432 3.88471 3.98975 4.12434 4.18902 4.45404 4.61639 4.70046 4.85145 4.92051 5.12637 5.26586 5.32431 5.63411 5.68274 6.01748 6.11456 6.49933 6.70121 7.31186 7.45099 8.85729 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.047121 B = 0.012955 C = 0.011697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.068367 B = 2160.804907 C = 2393.301491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.094 3.906 3 N -0.455 5.455 4 C -0.064 4.064 5 C -0.065 4.065 6 N -0.552 5.552 7 C 0.221 3.779 8 C 0.108 3.892 9 C -0.529 4.529 10 H 0.045 0.955 11 C 0.013 3.987 12 N -0.923 5.923 13 Si 0.967 3.033 14 H -0.276 1.276 15 H -0.272 1.272 16 H -0.267 1.267 17 H 0.100 0.900 18 H 0.035 0.965 19 H 0.069 0.931 20 H 0.123 0.877 21 H 0.078 0.922 22 H 0.214 0.786 23 H 0.187 0.813 24 H 0.027 0.973 25 H 0.011 0.989 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -4.278 -11.333 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.027 4.027 3 N -0.138 5.138 4 C -0.197 4.197 5 C -0.213 4.213 6 N -0.272 5.272 7 C -0.042 4.042 8 C 0.070 3.930 9 C -0.568 4.568 10 H 0.063 0.937 11 C -0.187 4.187 12 N -0.562 5.562 13 Si 0.791 3.209 14 H -0.202 1.202 15 H -0.197 1.197 16 H -0.191 1.191 17 H 0.119 0.881 18 H 0.055 0.945 19 H 0.088 0.912 20 H 0.141 0.859 21 H 0.096 0.904 22 H 0.231 0.769 23 H 0.204 0.796 24 H 0.045 0.955 25 H 0.029 0.971 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.301 -3.814 -10.676 11.412 hybrid contribution 0.459 -0.644 0.205 0.817 sum -0.842 -4.459 -10.471 11.412 Atomic orbital electron populations 1.22076 0.93251 1.04209 1.01983 1.22053 0.96421 0.78955 1.05263 1.45713 1.48237 1.13478 1.06347 1.23187 1.09134 0.93614 0.93726 1.22773 1.08479 0.99185 0.90828 1.70197 1.21365 1.21840 1.13751 1.23821 1.01116 0.86959 0.92256 1.17426 0.96932 0.95645 0.83041 1.21132 0.97191 1.40803 0.97654 0.93661 1.25834 0.99717 0.96014 0.97089 1.70051 1.29067 1.47607 1.09521 0.85419 0.78928 0.78291 0.78232 1.20175 1.19736 1.19130 0.88111 0.94544 0.91178 0.85923 0.90395 0.76948 0.79634 0.95483 0.97053 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.24 71.98 0.74 -3.33 15 2 C 0.09 2.82 6.40 86.38 0.55 3.37 15 3 N -0.46 -17.41 2.75 -514.30 -1.41 -18.82 15 4 C -0.06 -2.07 11.58 83.09 0.96 -1.11 15 5 C -0.07 -2.49 11.87 83.52 0.99 -1.50 15 6 N -0.55 -27.23 11.25 -188.13 -2.12 -29.34 15 7 C 0.22 10.85 7.09 138.13 0.98 11.83 15 8 C 0.11 6.01 5.13 29.10 0.15 6.16 15 9 C -0.53 -30.86 9.09 25.60 0.23 -30.62 15 10 H 0.05 2.68 7.74 -2.91 -0.02 2.65 15 11 C 0.01 0.72 5.46 84.66 0.46 1.19 15 12 N -0.92 -54.82 13.29 21.45 0.28 -54.53 15 13 Si 0.97 44.33 29.54 68.60 2.03 46.36 15 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 17 H 0.10 1.98 8.14 -2.39 -0.02 1.96 15 18 H 0.04 1.16 7.67 -2.39 -0.02 1.15 15 19 H 0.07 1.60 8.14 -2.38 -0.02 1.58 15 20 H 0.12 2.61 8.13 -2.39 -0.02 2.59 15 21 H 0.08 2.72 7.92 -2.39 -0.02 2.70 15 22 H 0.21 4.47 8.06 -2.91 -0.02 4.44 15 23 H 0.19 5.61 8.06 -2.91 -0.02 5.58 15 24 H 0.03 1.49 7.36 -2.38 -0.02 1.47 15 25 H 0.01 0.69 8.14 -2.39 -0.02 0.67 15 26 H 0.27 14.87 8.31 -92.70 -0.77 14.10 15 Total: -1.00 -70.50 232.67 4.99 -65.51 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.15 Total: 4.83 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 5.07 Total: -14.01 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -3.25 Total: -102.70 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -70.50 4.99 -65.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234503.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.380 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds