Wall clock time and date at job start Mon Mar 30 2020 01:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30587 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48501 * 109.46630 * 240.00138 * 3 2 1 5 5 H 1.48502 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47144 * 119.99739 * 3 2 1 7 7 C 1.40474 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99971 * 179.97438 * 7 2 1 9 9 C 1.39352 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.39991 * 125.96111 * 179.97438 * 9 7 2 11 11 C 1.38855 * 106.79731 * 180.02562 * 10 9 7 12 12 C 1.38464 * 107.12706 * 0.02562 * 11 10 9 13 13 C 1.46962 * 125.66484 * 179.97438 * 12 11 10 14 14 N 1.30725 * 119.99908 * 359.97438 * 13 12 11 15 15 N 1.38189 * 120.00058 * 180.02562 * 13 12 11 16 16 O 1.34814 * 108.66858 * 359.97438 * 12 11 10 17 17 H 0.97004 * 119.99919 * 0.02562 * 1 2 3 18 18 H 1.08003 * 126.60391 * 0.02562 * 10 9 7 19 19 H 1.07995 * 126.44326 * 179.73210 * 11 10 9 20 20 H 0.97003 * 119.99531 * 179.97438 * 14 13 12 21 21 H 0.96998 * 119.99467 * 0.02562 * 15 13 12 22 22 H 0.97000 * 119.99878 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0936 1.6963 -1.2126 5 1 1.2749 2.7465 -0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0082 -1.2166 0.0005 8 1 3.0882 -1.2166 0.0001 9 6 1.3114 -2.4234 0.0005 10 6 1.8816 -3.7019 0.0005 11 6 0.8310 -4.6098 -0.0001 12 6 -0.3427 -3.8752 -0.0010 13 6 -1.7025 -4.4328 -0.0024 14 7 -1.8777 -5.7282 -0.0033 15 7 -2.7958 -3.5877 -0.0038 16 8 -0.0310 -2.5636 -0.0004 17 1 -0.4850 0.8401 -0.0004 18 1 2.9357 -3.9369 0.0009 19 1 0.9137 -5.6866 -0.0043 20 1 -2.7753 -6.0962 -0.0039 21 1 -2.6657 -2.6264 -0.0042 22 1 -3.6933 -3.9557 -0.0051 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261253289.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:53 Heat of formation + Delta-G solvation = 9.566622 kcal Electronic energy + Delta-G solvation = -10258.048907 eV Core-core repulsion = 8200.015921 eV Total energy + Delta-G solvation = -2058.032985 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.23111 -36.01442 -33.81411 -31.31717 -29.98800 -28.96219 -25.35395 -21.63618 -19.77157 -18.78384 -17.52707 -16.28868 -15.96700 -15.27283 -14.14316 -14.10744 -13.09533 -12.40709 -11.71287 -11.36581 -11.29986 -11.19504 -11.09148 -10.69861 -10.13862 -9.60893 -8.78207 -8.30126 -7.89736 -7.12887 -7.04642 -4.56390 2.59799 2.94407 2.95855 2.97234 3.73754 3.80363 4.49262 4.53868 4.69636 5.08772 6.29560 6.54995 6.70939 6.83454 7.05052 7.35284 7.50297 7.68544 7.87710 8.06824 8.36999 8.50732 8.54985 9.09415 9.43221 9.93584 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.069581 B = 0.012741 C = 0.010810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.311086 B = 2197.081291 C = 2589.550303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.066 3.934 3 Si 0.926 3.074 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.432 4.432 8 H 0.108 0.892 9 C 0.226 3.774 10 C -0.391 4.391 11 C -0.068 4.068 12 C -0.174 4.174 13 C 0.526 3.474 14 N -0.808 5.808 15 N -0.898 5.898 16 O -0.155 6.155 17 H 0.288 0.712 18 H 0.119 0.881 19 H 0.125 0.875 20 H 0.318 0.682 21 H 0.399 0.601 22 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 2.246 -0.006 2.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.156 4.156 3 Si 0.750 3.250 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.461 4.461 8 H 0.126 0.874 9 C 0.171 3.829 10 C -0.412 4.412 11 C -0.090 4.090 12 C -0.224 4.224 13 C 0.253 3.747 14 N -0.446 5.446 15 N -0.449 5.449 16 O -0.052 6.052 17 H 0.099 0.901 18 H 0.137 0.863 19 H 0.143 0.857 20 H 0.132 0.868 21 H 0.227 0.773 22 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.225 1.744 -0.006 2.132 hybrid contribution -0.950 1.239 -0.002 1.561 sum -2.175 2.983 -0.008 3.692 Atomic orbital electron populations 1.69651 1.07777 1.30280 1.31177 1.26239 0.95074 1.02174 0.92160 0.86049 0.79848 0.78831 0.80312 1.18481 1.20012 1.18474 1.18863 0.94909 0.87528 1.44820 0.87438 1.19674 0.79071 0.94092 0.90065 1.21408 0.97938 0.91927 1.29901 1.21338 0.91202 0.98270 0.98195 1.19085 0.90430 0.82584 1.30346 1.19321 0.84055 0.85818 0.85459 1.70121 1.28472 1.07896 1.38134 1.43799 1.06374 1.10396 1.84371 1.84387 1.23655 1.22760 1.74426 0.90093 0.86276 0.85725 0.86753 0.77262 0.78825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.01 11.98 55.58 0.67 -18.34 14 2 C 0.07 1.59 5.50 -17.24 -0.09 1.49 14 3 Si 0.93 17.40 29.56 -169.99 -5.03 12.37 14 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 14 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 14 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 14 7 C -0.43 -11.06 9.31 -38.33 -0.36 -11.42 14 8 H 0.11 2.53 7.85 -52.48 -0.41 2.11 14 9 C 0.23 6.18 6.78 -38.51 -0.26 5.92 14 10 C -0.39 -10.06 10.90 -38.70 -0.42 -10.48 14 11 C -0.07 -1.71 10.57 -39.27 -0.42 -2.13 14 12 C -0.17 -4.52 7.19 -35.97 -0.26 -4.78 14 13 C 0.53 11.95 8.12 -154.02 -1.25 10.70 14 14 N -0.81 -17.67 13.78 32.42 0.45 -17.22 14 15 N -0.90 -16.69 9.05 32.37 0.29 -16.40 14 16 O -0.16 -4.28 8.73 2.43 0.02 -4.25 14 17 H 0.29 6.40 8.29 -40.82 -0.34 6.07 14 18 H 0.12 2.79 8.06 -52.48 -0.42 2.37 14 19 H 0.12 2.94 8.06 -52.49 -0.42 2.51 14 20 H 0.32 6.00 8.82 -40.82 -0.36 5.64 14 21 H 0.40 7.61 8.66 -40.82 -0.35 7.26 14 22 H 0.38 5.72 8.85 -40.82 -0.36 5.36 14 LS Contribution 211.38 15.07 3.19 3.19 Total: -1.00 -28.53 211.38 -4.94 -33.47 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -1.47 Total: 17.89 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -3.06 Total: -10.70 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 1.41 Total: -51.96 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: 0.02 Total: -4.25 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -28.53 -4.94 -33.47 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253289.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.035 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds