Wall clock time and date at job start Mon Mar 30 2020 01:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30587 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48501 * 109.46630 * 240.00138 * 3 2 1 5 5 H 1.48502 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47144 * 119.99739 * 3 2 1 7 7 C 1.40474 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99971 * 179.97438 * 7 2 1 9 9 C 1.39352 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.39991 * 125.96111 * 179.97438 * 9 7 2 11 11 C 1.38855 * 106.79731 * 180.02562 * 10 9 7 12 12 C 1.38464 * 107.12706 * 0.02562 * 11 10 9 13 13 C 1.46962 * 125.66484 * 179.97438 * 12 11 10 14 14 N 1.30725 * 119.99908 * 359.97438 * 13 12 11 15 15 N 1.38189 * 120.00058 * 180.02562 * 13 12 11 16 16 O 1.34814 * 108.66858 * 359.97438 * 12 11 10 17 17 H 0.97004 * 119.99919 * 0.02562 * 1 2 3 18 18 H 1.08003 * 126.60391 * 0.02562 * 10 9 7 19 19 H 1.07995 * 126.44326 * 179.73210 * 11 10 9 20 20 H 0.97003 * 119.99531 * 179.97438 * 14 13 12 21 21 H 0.96998 * 119.99467 * 0.02562 * 15 13 12 22 22 H 0.97000 * 119.99878 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0936 1.6963 -1.2126 5 1 1.2749 2.7465 -0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0082 -1.2166 0.0005 8 1 3.0882 -1.2166 0.0001 9 6 1.3114 -2.4234 0.0005 10 6 1.8816 -3.7019 0.0005 11 6 0.8310 -4.6098 -0.0001 12 6 -0.3427 -3.8752 -0.0010 13 6 -1.7025 -4.4328 -0.0024 14 7 -1.8777 -5.7282 -0.0033 15 7 -2.7958 -3.5877 -0.0038 16 8 -0.0310 -2.5636 -0.0004 17 1 -0.4850 0.8401 -0.0004 18 1 2.9357 -3.9369 0.0009 19 1 0.9137 -5.6866 -0.0043 20 1 -2.7753 -6.0962 -0.0039 21 1 -2.6657 -2.6264 -0.0042 22 1 -3.6933 -3.9557 -0.0051 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261253289.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:53 Heat of formation + Delta-G solvation = -10.434778 kcal Electronic energy + Delta-G solvation = -10258.916232 eV Core-core repulsion = 8200.015921 eV Total energy + Delta-G solvation = -2058.900311 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.20200 -37.72181 -35.66590 -33.25621 -31.70008 -30.87531 -27.24763 -23.49439 -21.74757 -20.63728 -19.46782 -17.96545 -17.65052 -17.00301 -16.15142 -15.81023 -14.89828 -14.13776 -13.41639 -13.21824 -13.11896 -12.92036 -12.85615 -12.45731 -11.85913 -11.32220 -10.49192 -10.29037 -9.56841 -9.04822 -8.84380 -6.51047 0.75416 1.40969 1.41972 1.56706 1.99453 2.17288 2.64608 2.65847 3.06595 3.15993 4.47250 4.60773 4.95515 5.04416 5.12321 5.41346 5.59253 5.94849 6.09175 6.23492 6.50158 6.59923 6.91527 7.14950 7.76139 8.16526 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.069581 B = 0.012741 C = 0.010810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.311086 B = 2197.081291 C = 2589.550303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.024 3.976 3 Si 1.007 2.993 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.253 1.253 7 C -0.457 4.457 8 H 0.121 0.879 9 C 0.190 3.810 10 C -0.408 4.408 11 C -0.078 4.078 12 C -0.197 4.197 13 C 0.518 3.482 14 N -0.812 5.812 15 N -0.881 5.881 16 O -0.171 6.171 17 H 0.299 0.701 18 H 0.134 0.866 19 H 0.138 0.862 20 H 0.335 0.665 21 H 0.398 0.602 22 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 3.275 -0.007 3.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.197 4.197 3 Si 0.826 3.174 4 H -0.177 1.177 5 H -0.189 1.189 6 H -0.177 1.177 7 C -0.485 4.485 8 H 0.139 0.861 9 C 0.136 3.864 10 C -0.428 4.428 11 C -0.100 4.100 12 C -0.247 4.247 13 C 0.243 3.757 14 N -0.452 5.452 15 N -0.433 5.433 16 O -0.069 6.069 17 H 0.110 0.890 18 H 0.152 0.848 19 H 0.156 0.844 20 H 0.151 0.849 21 H 0.226 0.774 22 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.273 2.745 -0.007 3.026 hybrid contribution -1.024 0.866 -0.002 1.341 sum -2.297 3.611 -0.009 4.280 Atomic orbital electron populations 1.69705 1.09473 1.32075 1.30711 1.27284 0.95892 1.05632 0.90850 0.84854 0.78417 0.73538 0.80630 1.17715 1.18916 1.17704 1.19358 0.95820 0.88121 1.45196 0.86141 1.20254 0.79383 0.95418 0.91360 1.21648 0.98831 0.91762 1.30595 1.21544 0.91198 0.98897 0.98353 1.19706 0.92204 0.82314 1.30452 1.19091 0.83922 0.86477 0.86176 1.70045 1.30128 1.07680 1.37353 1.43569 1.06519 1.09926 1.83292 1.84349 1.23957 1.23616 1.74946 0.88983 0.84843 0.84439 0.84866 0.77365 0.76507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.29 11.98 21.92 0.26 -39.02 14 2 C 0.02 1.10 5.50 85.42 0.47 1.57 14 3 Si 1.01 34.31 29.56 68.60 2.03 36.33 14 4 H -0.25 -8.30 7.11 99.48 0.71 -7.59 14 5 H -0.27 -8.51 7.11 99.48 0.71 -7.80 14 6 H -0.25 -8.29 7.11 99.48 0.71 -7.58 14 7 C -0.46 -23.43 9.31 23.08 0.21 -23.21 14 8 H 0.12 5.62 7.85 -2.91 -0.02 5.60 14 9 C 0.19 10.57 6.78 22.96 0.16 10.72 14 10 C -0.41 -21.25 10.90 22.84 0.25 -21.00 14 11 C -0.08 -3.97 10.57 22.47 0.24 -3.73 14 12 C -0.20 -10.28 7.19 24.61 0.18 -10.10 14 13 C 0.52 23.10 8.12 135.90 1.10 24.20 14 14 N -0.81 -34.34 13.78 -51.35 -0.71 -35.05 14 15 N -0.88 -31.60 9.05 -51.50 -0.47 -32.07 14 16 O -0.17 -9.55 8.73 -14.21 -0.12 -9.68 14 17 H 0.30 13.05 8.29 -92.71 -0.77 12.28 14 18 H 0.13 6.31 8.06 -2.91 -0.02 6.29 14 19 H 0.14 6.47 8.06 -2.91 -0.02 6.44 14 20 H 0.34 11.96 8.82 -92.71 -0.82 11.14 14 21 H 0.40 14.88 8.66 -92.71 -0.80 14.08 14 22 H 0.40 11.21 8.85 -92.71 -0.82 10.39 14 Total: -1.00 -60.21 211.38 2.44 -57.77 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -1.16 Total: 43.26 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 2.61 Total: -21.54 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -0.91 Total: -106.14 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.12 Total: -9.68 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.33 kcal Total: -60.21 2.44 -57.77 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253289.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.335 kcal (2) G-P(sol) polarization free energy of solvation -60.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds