Wall clock time and date at job start Mon Mar 30 2020 01:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38215 * 119.41693 * 2 1 4 4 C 1.38889 * 119.61018 * 359.83290 * 3 2 1 5 5 H 1.08002 * 120.00083 * 336.97219 * 4 3 2 6 6 C 1.41198 * 119.99831 * 156.97599 * 4 3 2 7 7 N 1.30180 * 120.00363 * 349.55659 * 6 4 3 8 8 Si 1.86800 * 119.99936 * 169.55639 * 6 4 3 9 9 H 1.48507 * 109.47140 * 89.99962 * 8 6 4 10 10 H 1.48497 * 109.47240 * 209.99842 * 8 6 4 11 11 H 1.48498 * 109.47373 * 330.00176 * 8 6 4 12 12 C 1.50589 * 120.77489 * 179.85914 * 3 2 1 13 13 C 1.53100 * 109.44087 * 29.69325 * 12 3 2 14 14 C 1.53133 * 109.02692 * 301.92609 * 13 12 3 15 15 C 1.40671 * 119.40822 * 179.72734 * 2 1 3 16 16 O 1.21471 * 119.75980 * 359.95385 * 15 2 1 17 17 H 1.09008 * 109.47029 * 84.83132 * 1 2 3 18 18 H 1.08990 * 109.47584 * 204.83191 * 1 2 3 19 19 H 1.08998 * 109.46816 * 324.83632 * 1 2 3 20 20 H 0.96993 * 120.00172 * 175.78186 * 7 6 4 21 21 H 1.09000 * 109.47844 * 149.68655 * 12 3 2 22 22 H 1.09004 * 109.47493 * 269.70549 * 12 3 2 23 23 H 1.08997 * 109.53941 * 61.78670 * 13 12 3 24 24 H 1.08993 * 109.54178 * 182.06097 * 13 12 3 25 25 H 1.09003 * 109.50807 * 177.68624 * 14 13 12 26 26 H 1.08992 * 109.51554 * 297.78435 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.2039 0.0000 4 6 1.4711 2.3948 -0.0035 5 1 0.4561 2.4143 -0.3720 6 6 2.0715 3.5800 0.4746 7 7 3.2103 3.5251 1.1029 8 14 1.2317 5.2267 0.2055 9 1 0.3311 5.5160 1.3502 10 1 2.2583 6.2946 0.1011 11 1 0.4381 5.1786 -1.0488 12 6 3.6913 1.2396 0.0032 13 6 4.2320 -0.0029 -0.7093 14 6 3.7042 -1.2538 -0.0010 15 6 2.1977 -1.2254 0.0058 16 8 1.5752 -2.2685 0.0116 17 1 -0.3633 0.0926 -1.0236 18 1 -0.3634 -0.9325 0.4315 19 1 -0.3633 0.8401 0.5918 20 1 3.6527 4.3435 1.3774 21 1 4.0348 2.1345 -0.5158 22 1 4.0523 1.2548 1.0316 23 1 3.8975 -0.0028 -1.7467 24 1 5.3214 0.0028 -0.6760 25 1 4.0512 -2.1435 -0.5267 26 1 4.0693 -1.2722 1.0258 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261284841.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:02 Heat of formation + Delta-G solvation = -61.752113 kcal Electronic energy + Delta-G solvation = -10774.414660 eV Core-core repulsion = 8816.829406 eV Total energy + Delta-G solvation = -1957.585254 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.30155 -35.69598 -33.46092 -31.56269 -28.21787 -26.05719 -24.61513 -20.82631 -20.53104 -17.30836 -15.86157 -15.44291 -14.22138 -13.97543 -13.58396 -12.81287 -12.68527 -12.22639 -11.69855 -11.55256 -11.40472 -11.18125 -10.95233 -10.63917 -10.52599 -10.08357 -9.74864 -9.47192 -9.42504 -7.80978 -7.60177 -7.13000 -4.82375 2.47758 2.84624 2.89018 3.04136 3.60701 4.24705 4.99499 5.74790 5.92376 6.02282 6.24706 6.46724 6.56500 6.68792 6.72941 6.79450 6.96877 7.10659 7.17726 7.23712 7.35566 7.63377 7.72275 8.08967 8.11863 8.53336 8.81202 9.59651 9.64190 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.056841 B = 0.014739 C = 0.012229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.486714 B = 1899.263690 C = 2289.090696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.453 4.453 3 C 0.141 3.859 4 C -0.411 4.411 5 H 0.093 0.907 6 C 0.070 3.930 7 N -0.759 5.759 8 Si 0.919 3.081 9 H -0.263 1.263 10 H -0.271 1.271 11 H -0.255 1.255 12 C -0.069 4.069 13 C -0.113 4.113 14 C -0.159 4.159 15 C 0.383 3.617 16 O -0.575 6.575 17 H 0.017 0.983 18 H 0.033 0.967 19 H 0.037 0.963 20 H 0.293 0.707 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 4.633 -0.988 5.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.457 4.457 3 C 0.136 3.864 4 C -0.437 4.437 5 H 0.111 0.889 6 C -0.155 4.155 7 N -0.382 5.382 8 Si 0.742 3.258 9 H -0.187 1.187 10 H -0.196 1.196 11 H -0.178 1.178 12 C -0.106 4.106 13 C -0.151 4.151 14 C -0.197 4.197 15 C 0.280 3.720 16 O -0.468 6.468 17 H 0.036 0.964 18 H 0.052 0.948 19 H 0.056 0.944 20 H 0.105 0.895 21 H 0.087 0.913 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.420 4.282 -0.813 4.985 hybrid contribution -0.086 0.926 -0.036 0.931 sum 2.333 5.209 -0.849 5.770 Atomic orbital electron populations 1.19793 0.93689 0.98843 0.97739 1.19877 0.94966 0.92472 1.38406 1.19415 0.92529 0.92352 0.82068 1.20033 1.01007 0.92046 1.30629 0.88939 1.26525 0.94545 1.02613 0.91767 1.69528 1.13956 1.32279 1.22397 0.86101 0.80080 0.78945 0.80686 1.18738 1.19580 1.17815 1.20538 0.94058 0.95360 1.00612 1.21619 0.98625 0.95288 0.99569 1.21962 0.98536 0.98193 1.01035 1.19954 0.88933 0.89145 0.73980 1.90352 1.70603 1.36589 1.49294 0.96436 0.94788 0.94396 0.89539 0.91332 0.90558 0.92650 0.93053 0.91813 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.10 8.95 36.01 0.32 -0.78 15 2 C -0.45 -11.94 5.87 -103.71 -0.61 -12.55 15 3 C 0.14 3.53 5.55 -104.44 -0.58 2.95 15 4 C -0.41 -9.96 8.09 -38.22 -0.31 -10.27 15 5 H 0.09 2.22 6.64 -52.49 -0.35 1.87 15 6 C 0.07 1.54 5.19 -17.13 -0.09 1.45 15 7 N -0.76 -16.69 10.60 55.62 0.59 -16.10 15 8 Si 0.92 16.41 29.58 -169.99 -5.03 11.38 15 9 H -0.26 -4.71 7.11 56.52 0.40 -4.31 15 10 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 11 H -0.25 -4.58 7.11 56.52 0.40 -4.18 15 12 C -0.07 -1.53 4.17 -27.89 -0.12 -1.65 15 13 C -0.11 -2.27 5.97 -26.61 -0.16 -2.43 15 14 C -0.16 -3.45 6.06 -27.82 -0.17 -3.62 15 15 C 0.38 10.06 6.80 -33.40 -0.23 9.83 15 16 O -0.58 -16.66 16.76 5.39 0.09 -16.57 15 17 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 15 18 H 0.03 0.86 7.39 -51.93 -0.38 0.47 15 19 H 0.04 0.90 6.86 -51.93 -0.36 0.55 15 20 H 0.29 5.73 8.29 -40.82 -0.34 5.39 15 21 H 0.07 1.52 7.04 -51.93 -0.37 1.15 15 22 H 0.08 1.75 7.71 -51.93 -0.40 1.35 15 23 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.06 1.29 8.14 -51.93 -0.42 0.86 15 26 H 0.07 1.51 8.14 -51.93 -0.42 1.09 15 LS Contribution 219.55 15.07 3.31 3.31 Total: -1.00 -27.85 219.55 -6.08 -33.92 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -3.10 Total: 1.13 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -1.94 Total: -17.08 kcal Atomic # 7 Polarization: -16.69 SS G_CDS: 0.59 Total: -16.10 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.09 Total: -16.57 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: -5.03 Total: 11.38 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -27.85 -6.08 -33.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284841.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.829 kcal (2) G-P(sol) polarization free energy of solvation -27.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds