Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 N 1.46507 * 109.47026 * 89.97965 * 6 5 4 8 8 C 1.36938 * 120.00025 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99881 * 359.97438 * 8 7 6 10 10 C 1.38804 * 119.99834 * 179.97438 * 8 7 6 11 11 N 1.31624 * 120.00231 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99829 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47254 * 89.99978 * 12 10 8 14 14 H 1.48504 * 109.47014 * 209.99840 * 12 10 8 15 15 H 1.48497 * 109.47195 * 329.99549 * 12 10 8 16 16 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 17 17 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 18 18 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 19 19 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 20 20 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 21 21 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 22 22 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 23 23 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 24 24 H 0.97001 * 119.99756 * 359.97438 * 7 6 5 25 25 H 0.96996 * 119.99999 * 179.97438 * 11 10 8 26 26 H 1.07994 * 125.89572 * 180.02562 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 7 5.1547 -1.8847 1.3811 8 6 6.2403 -2.6810 1.6314 9 1 6.8058 -3.0967 0.8106 10 6 6.6139 -2.9537 2.9401 11 7 5.9250 -2.4466 3.9405 12 14 8.0943 -4.0405 3.2816 13 1 9.3153 -3.2001 3.3707 14 1 7.8942 -4.7606 4.5649 15 1 8.2501 -5.0249 2.1808 16 6 2.2595 -1.1081 -0.0002 17 1 -0.3634 -0.0005 1.0276 18 1 -0.3634 0.8902 -0.5135 19 1 -0.3633 -0.8898 -0.5142 20 1 1.9171 2.1325 0.0009 21 1 4.4165 1.3438 0.0033 22 1 4.5268 -2.5289 -0.5135 23 1 5.5803 -1.0941 -0.5145 24 1 4.6470 -1.5109 2.1183 25 1 6.1858 -2.6376 4.8550 26 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306150882.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = 63.554014 kcal Electronic energy + Delta-G solvation = -10200.323173 eV Core-core repulsion = 8280.464351 eV Total energy + Delta-G solvation = -1919.858822 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.65877 -34.68339 -32.58382 -30.71239 -28.40910 -26.71842 -24.39491 -22.18046 -19.85854 -18.99428 -17.14477 -16.31483 -14.97049 -14.42984 -13.74218 -13.22142 -13.09166 -12.89063 -12.49146 -12.19448 -11.99242 -11.13536 -11.02682 -10.68791 -10.63741 -9.96217 -9.62507 -8.73941 -8.02383 -7.61572 -6.73982 -5.62242 -2.89448 2.68616 3.31349 3.50915 3.52048 3.57422 3.59659 4.74097 4.85396 5.19771 5.34247 5.41649 5.61835 5.71349 6.04863 6.13581 6.44424 6.57683 6.72390 6.87878 7.13354 7.53299 7.71830 7.81426 7.82343 8.57226 9.67971 10.30639 10.66902 11.60985 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.088202 B = 0.008561 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.375395 B = 3269.914555 C = 3336.225454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.460 5.460 3 C -0.032 4.032 4 C -0.182 4.182 5 C -0.155 4.155 6 C 0.219 3.781 7 N -0.728 5.728 8 C -0.234 4.234 9 H 0.070 0.930 10 C -0.018 4.018 11 N -0.935 5.935 12 Si 0.906 3.094 13 H -0.291 1.291 14 H -0.293 1.293 15 H -0.282 1.282 16 C -0.010 4.010 17 H 0.067 0.933 18 H 0.076 0.924 19 H 0.078 0.922 20 H 0.155 0.845 21 H 0.132 0.868 22 H 0.020 0.980 23 H 0.023 0.977 24 H 0.385 0.615 25 H 0.253 0.747 26 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 5.211 -8.124 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.138 5.138 3 C -0.161 4.161 4 C -0.207 4.207 5 C -0.162 4.162 6 C 0.091 3.909 7 N -0.372 5.372 8 C -0.365 4.365 9 H 0.088 0.912 10 C -0.213 4.213 11 N -0.584 5.584 12 Si 0.737 3.263 13 H -0.218 1.218 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.139 4.139 17 H 0.086 0.914 18 H 0.095 0.905 19 H 0.097 0.903 20 H 0.172 0.828 21 H 0.150 0.850 22 H 0.037 0.963 23 H 0.041 0.959 24 H 0.218 0.782 25 H 0.063 0.937 26 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.529 5.093 -8.156 14.260 hybrid contribution 0.582 -0.413 0.606 0.936 sum -9.947 4.680 -7.550 13.336 Atomic orbital electron populations 1.21895 0.78164 1.03566 1.02755 1.43868 1.05592 1.06326 1.57969 1.21660 0.90625 0.91030 1.12761 1.20854 0.95599 0.94978 1.09316 1.19872 0.94169 0.94224 1.07889 1.18996 0.90183 0.93339 0.88370 1.42446 1.34131 1.59463 1.01154 1.19301 1.04040 1.21437 0.91755 0.91204 1.24727 0.99564 1.01426 0.95590 1.69687 1.41454 1.49275 0.98034 0.86193 0.82726 0.80139 0.77196 1.21838 1.21913 1.20820 1.21650 0.90238 0.91010 1.11022 0.91419 0.90478 0.90316 0.82791 0.85017 0.96252 0.95915 0.78175 0.93711 0.82492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 11.12 59.85 0.67 1.42 15 2 N -0.46 -6.84 3.15 -124.53 -0.39 -7.24 15 3 C -0.03 -0.50 11.43 -16.75 -0.19 -0.69 15 4 C -0.18 -3.33 10.81 -39.78 -0.43 -3.76 15 5 C -0.15 -3.11 5.50 -104.82 -0.58 -3.69 15 6 C 0.22 5.00 6.76 -5.19 -0.04 4.97 15 7 N -0.73 -20.17 5.59 -61.09 -0.34 -20.52 15 8 C -0.23 -6.94 9.99 -15.06 -0.15 -7.09 15 9 H 0.07 1.99 7.83 -52.49 -0.41 1.58 15 10 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 15 11 N -0.94 -29.73 13.06 55.49 0.72 -29.00 15 12 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 15 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 15 14 H -0.29 -7.53 7.11 56.52 0.40 -7.12 15 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 16 C -0.01 -0.17 11.35 -16.75 -0.19 -0.36 15 17 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 18 H 0.08 0.57 8.14 -51.93 -0.42 0.15 15 19 H 0.08 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.15 1.82 8.06 -52.49 -0.42 1.40 15 21 H 0.13 2.31 8.06 -52.49 -0.42 1.89 15 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 24 H 0.38 11.37 7.66 -40.82 -0.31 11.05 15 25 H 0.25 7.73 8.31 -40.82 -0.34 7.39 15 26 H 0.16 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 233.81 15.07 3.52 3.52 Total: -1.00 -33.75 233.81 -5.75 -39.51 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.24 Total: 5.33 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -1.00 Total: -9.82 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.01 Total: -56.75 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -33.75 -5.75 -39.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306150882.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.060 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds