Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 N 1.46507 * 109.47026 * 89.97965 * 6 5 4 8 8 C 1.36938 * 120.00025 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99881 * 359.97438 * 8 7 6 10 10 C 1.38804 * 119.99834 * 179.97438 * 8 7 6 11 11 N 1.31624 * 120.00231 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99829 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47254 * 89.99978 * 12 10 8 14 14 H 1.48504 * 109.47014 * 209.99840 * 12 10 8 15 15 H 1.48497 * 109.47195 * 329.99549 * 12 10 8 16 16 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 17 17 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 18 18 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 19 19 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 20 20 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 21 21 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 22 22 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 23 23 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 24 24 H 0.97001 * 119.99756 * 359.97438 * 7 6 5 25 25 H 0.96996 * 119.99999 * 179.97438 * 11 10 8 26 26 H 1.07994 * 125.89572 * 180.02562 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 7 5.1547 -1.8847 1.3811 8 6 6.2403 -2.6810 1.6314 9 1 6.8058 -3.0967 0.8106 10 6 6.6139 -2.9537 2.9401 11 7 5.9250 -2.4466 3.9405 12 14 8.0943 -4.0405 3.2816 13 1 9.3153 -3.2001 3.3707 14 1 7.8942 -4.7606 4.5649 15 1 8.2501 -5.0249 2.1808 16 6 2.2595 -1.1081 -0.0002 17 1 -0.3634 -0.0005 1.0276 18 1 -0.3634 0.8902 -0.5135 19 1 -0.3633 -0.8898 -0.5142 20 1 1.9171 2.1325 0.0009 21 1 4.4165 1.3438 0.0033 22 1 4.5268 -2.5289 -0.5135 23 1 5.5803 -1.0941 -0.5145 24 1 4.6470 -1.5109 2.1183 25 1 6.1858 -2.6376 4.8550 26 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306150882.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = 40.987500 kcal Electronic energy + Delta-G solvation = -10201.301731 eV Core-core repulsion = 8280.464351 eV Total energy + Delta-G solvation = -1920.837379 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.92750 -36.64263 -34.15896 -32.54968 -29.92473 -28.08791 -26.08257 -24.13006 -21.09098 -20.46182 -19.18466 -17.70047 -16.59514 -15.95995 -15.31918 -15.01507 -14.67047 -14.66349 -13.67348 -13.38773 -13.17996 -12.88129 -12.84041 -12.49690 -12.39720 -12.01498 -11.81050 -10.93599 -9.32063 -8.97727 -8.94845 -7.91561 -5.20993 1.41275 1.48157 1.51239 1.59755 2.08031 2.23339 2.61564 3.40582 4.08726 4.25587 4.34763 4.38175 4.51495 4.64481 4.67941 4.75337 4.98354 5.05569 5.34727 5.49777 5.67898 6.12363 6.29862 6.36502 6.64518 7.35478 8.12719 8.39466 9.32491 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.088202 B = 0.008561 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.375395 B = 3269.914555 C = 3336.225454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.454 5.454 3 C -0.011 4.011 4 C -0.220 4.220 5 C -0.193 4.193 6 C 0.221 3.779 7 N -0.740 5.740 8 C -0.247 4.247 9 H 0.077 0.923 10 C -0.079 4.079 11 N -0.973 5.973 12 Si 0.979 3.021 13 H -0.286 1.286 14 H -0.293 1.293 15 H -0.267 1.267 16 C -0.012 4.012 17 H 0.077 0.923 18 H 0.106 0.894 19 H 0.095 0.905 20 H 0.196 0.804 21 H 0.126 0.874 22 H 0.023 0.977 23 H 0.017 0.983 24 H 0.371 0.629 25 H 0.251 0.749 26 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.357 5.418 -8.746 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.129 5.129 3 C -0.141 4.141 4 C -0.245 4.245 5 C -0.200 4.200 6 C 0.095 3.905 7 N -0.382 5.382 8 C -0.379 4.379 9 H 0.095 0.905 10 C -0.270 4.270 11 N -0.625 5.625 12 Si 0.808 3.192 13 H -0.213 1.213 14 H -0.220 1.220 15 H -0.192 1.192 16 C -0.144 4.144 17 H 0.095 0.905 18 H 0.125 0.875 19 H 0.113 0.887 20 H 0.213 0.787 21 H 0.144 0.856 22 H 0.041 0.959 23 H 0.035 0.965 24 H 0.203 0.797 25 H 0.060 0.940 26 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.626 5.305 -8.828 15.532 hybrid contribution 0.816 -0.423 0.737 1.178 sum -10.810 4.882 -8.090 14.357 Atomic orbital electron populations 1.22295 0.74687 1.05982 1.04128 1.44206 1.07641 1.05228 1.55868 1.22182 0.89588 0.92759 1.09620 1.20981 0.97246 0.94343 1.11912 1.19751 0.94164 0.94884 1.11225 1.19001 0.91584 0.94057 0.85891 1.42670 1.33677 1.59194 1.02643 1.19746 1.04555 1.21358 0.92246 0.90527 1.25636 1.02820 1.03277 0.95315 1.69862 1.43391 1.50967 0.98236 0.85053 0.78772 0.78312 0.77095 1.21327 1.21994 1.19218 1.21766 0.89952 0.92370 1.10263 0.90480 0.87503 0.88670 0.78745 0.85562 0.95916 0.96498 0.79737 0.94033 0.81392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 11.12 127.77 1.42 2.49 15 2 N -0.45 -12.29 3.15 -547.90 -1.72 -14.02 15 3 C -0.01 -0.32 11.43 83.21 0.95 0.63 15 4 C -0.22 -8.01 10.81 22.14 0.24 -7.77 15 5 C -0.19 -7.83 5.50 -19.99 -0.11 -7.94 15 6 C 0.22 10.37 6.76 85.63 0.58 10.95 15 7 N -0.74 -41.98 5.59 -347.18 -1.94 -43.92 15 8 C -0.25 -14.85 9.99 84.03 0.84 -14.01 15 9 H 0.08 4.38 7.83 -2.91 -0.02 4.36 15 10 C -0.08 -4.77 5.50 84.86 0.47 -4.31 15 11 N -0.97 -62.87 13.06 21.65 0.28 -62.59 15 12 Si 0.98 48.02 29.55 68.60 2.03 50.05 15 13 H -0.29 -13.74 7.11 99.48 0.71 -13.03 15 14 H -0.29 -14.32 7.11 99.48 0.71 -13.62 15 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 16 C -0.01 -0.41 11.35 83.21 0.94 0.53 15 17 H 0.08 1.11 8.14 -2.39 -0.02 1.09 15 18 H 0.11 1.07 8.14 -2.38 -0.02 1.05 15 19 H 0.09 1.19 8.14 -2.39 -0.02 1.18 15 20 H 0.20 3.79 8.06 -2.91 -0.02 3.76 15 21 H 0.13 4.54 8.06 -2.91 -0.02 4.52 15 22 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 23 H 0.02 0.81 8.14 -2.38 -0.02 0.79 15 24 H 0.37 22.63 7.66 -92.71 -0.71 21.92 15 25 H 0.25 15.55 8.31 -92.71 -0.77 14.78 15 26 H 0.17 5.18 8.06 -2.91 -0.02 5.16 15 Total: -1.00 -72.96 233.81 4.42 -68.54 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.45 Total: 21.35 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 5.33 Total: -19.42 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -3.38 Total: -120.52 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -72.96 4.42 -68.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306150882.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.529 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds