Wall clock time and date at job start Mon Mar 30 2020 01:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99942 * 2 1 4 4 H 1.48506 * 109.46827 * 239.99861 * 3 2 1 5 5 H 1.48500 * 109.47439 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47144 * 120.00046 * 3 2 1 7 7 C 1.37873 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00380 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99730 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46915 * 179.97438 * 9 7 2 11 11 C 1.35940 * 120.42824 * 89.99819 * 10 9 7 12 12 C 1.35595 * 120.10671 * 179.97438 * 11 10 9 13 13 N 1.33018 * 120.96187 * 0.02896 * 12 11 10 14 14 C 1.31002 * 120.86060 * 359.97438 * 13 12 11 15 15 C 1.35057 * 120.42488 * 270.02066 * 10 9 7 16 16 O 1.21974 * 120.46389 * 359.97438 * 15 10 9 17 17 H 0.96997 * 120.00116 * 0.02562 * 1 2 3 18 18 H 1.08994 * 109.47218 * 59.99864 * 9 7 2 19 19 H 1.08996 * 109.47006 * 299.99656 * 9 7 2 20 20 H 1.08002 * 119.94842 * 0.02562 * 11 10 9 21 21 H 1.07997 * 119.52004 * 179.74169 * 12 11 10 22 22 H 1.08002 * 120.07683 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6504 -4.1359 1.1727 12 6 3.5311 -5.1668 1.1651 13 7 3.9717 -5.6821 0.0206 14 6 3.5655 -5.2070 -1.1307 15 6 2.6477 -4.1322 -1.1641 16 8 2.2620 -3.6812 -2.2297 17 1 -0.4850 0.8400 -0.0004 18 1 0.6246 -2.5571 -0.8896 19 1 0.6240 -2.5567 0.8903 20 1 2.3032 -3.7304 2.1115 21 1 3.8836 -5.5725 2.1018 22 1 3.9311 -5.6352 -2.0523 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306398139.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:17 Heat of formation + Delta-G solvation = 3.874067 kcal Electronic energy + Delta-G solvation = -10327.548094 eV Core-core repulsion = 8269.268261 eV Total energy + Delta-G solvation = -2058.279833 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.91671 -36.78493 -35.21342 -32.81325 -29.72931 -28.11321 -24.77153 -23.44655 -22.00237 -17.71575 -17.10389 -16.71197 -15.93058 -14.97174 -14.72767 -13.75054 -13.57630 -12.65648 -12.59338 -12.06591 -11.62535 -11.39183 -10.86143 -10.65616 -10.58958 -10.38738 -9.46527 -8.70997 -8.68055 -7.49091 -6.33067 -4.41602 1.19328 2.33297 3.19045 3.23849 3.25155 3.37304 4.20374 4.30941 4.82258 4.94374 5.05318 5.26886 5.75595 5.88554 6.45972 6.56541 6.91991 7.00580 7.56784 7.59660 7.78170 8.23401 8.52664 8.62790 9.25217 10.75475 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.062810 B = 0.012314 C = 0.011898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.678518 B = 2273.355475 C = 2352.686033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.217 3.783 10 N -0.456 5.456 11 C 0.131 3.869 12 C -0.092 4.092 13 N -0.401 5.401 14 C 0.003 3.997 15 C 0.466 3.534 16 O -0.534 6.534 17 H 0.270 0.730 18 H 0.063 0.937 19 H 0.052 0.948 20 H 0.165 0.835 21 H 0.164 0.836 22 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 -6.056 3.967 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.099 3.901 10 N -0.164 5.164 11 C -0.006 4.006 12 C -0.236 4.236 13 N -0.115 5.115 14 C -0.184 4.184 15 C 0.263 3.737 16 O -0.412 6.412 17 H 0.079 0.921 18 H 0.081 0.919 19 H 0.069 0.931 20 H 0.183 0.817 21 H 0.181 0.819 22 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.039 -6.188 3.441 8.152 hybrid contribution -0.161 1.647 0.121 1.659 sum 3.878 -4.541 3.562 6.953 Atomic orbital electron populations 1.69903 1.06102 1.27948 1.48535 1.24920 0.95003 0.99564 0.94082 0.86378 0.79456 0.81667 0.78987 1.19833 1.20814 1.19897 1.21147 0.93418 0.89642 1.53868 0.91956 1.20063 0.87565 0.81864 1.00595 1.46593 1.35430 1.28469 1.05900 1.23182 0.92996 0.92604 0.91821 1.21708 1.04249 1.00612 0.96982 1.67459 1.19662 1.25783 0.98563 1.24501 0.99773 0.97031 0.97075 1.18496 0.84952 0.86057 0.84196 1.90926 1.59431 1.62956 1.27907 0.92066 0.91883 0.93051 0.81737 0.81915 0.80829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 13.29 55.43 0.74 -24.29 14 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 14 3 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 14 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 14 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 14 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 14 7 C -0.54 -14.79 9.39 -34.44 -0.32 -15.11 14 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 14 9 C 0.22 5.39 5.17 -5.19 -0.03 5.37 14 10 N -0.46 -9.77 2.59 -120.57 -0.31 -10.08 14 11 C 0.13 2.18 10.37 -16.68 -0.17 2.01 14 12 C -0.09 -1.41 11.09 -17.98 -0.20 -1.61 14 13 N -0.40 -6.85 10.43 -13.00 -0.14 -6.99 14 14 C 0.00 0.05 11.24 -16.71 -0.19 -0.14 14 15 C 0.47 10.35 7.46 -14.94 -0.11 10.24 14 16 O -0.53 -13.91 16.79 4.94 0.08 -13.83 14 17 H 0.27 7.17 8.31 -40.82 -0.34 6.83 14 18 H 0.06 1.76 7.47 -51.93 -0.39 1.37 14 19 H 0.05 1.23 8.05 -51.93 -0.42 0.81 14 20 H 0.17 2.22 8.06 -52.49 -0.42 1.80 14 21 H 0.16 1.87 8.06 -52.49 -0.42 1.45 14 22 H 0.17 2.68 8.06 -52.49 -0.42 2.26 14 LS Contribution 209.93 15.07 3.16 3.16 Total: -1.00 -31.19 209.93 -4.22 -35.41 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -1.62 Total: -1.90 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.12 Total: 2.53 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.29 Total: -41.36 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -31.19 -4.22 -35.41 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306398139.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.283 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds