Wall clock time and date at job start Mon Mar 30 2020 01:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99942 * 2 1 4 4 H 1.48506 * 109.46827 * 239.99861 * 3 2 1 5 5 H 1.48500 * 109.47439 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47144 * 120.00046 * 3 2 1 7 7 C 1.37873 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00380 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99730 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46915 * 179.97438 * 9 7 2 11 11 C 1.35940 * 120.42824 * 89.99819 * 10 9 7 12 12 C 1.35595 * 120.10671 * 179.97438 * 11 10 9 13 13 N 1.33018 * 120.96187 * 0.02896 * 12 11 10 14 14 C 1.31002 * 120.86060 * 359.97438 * 13 12 11 15 15 C 1.35057 * 120.42488 * 270.02066 * 10 9 7 16 16 O 1.21974 * 120.46389 * 359.97438 * 15 10 9 17 17 H 0.96997 * 120.00116 * 0.02562 * 1 2 3 18 18 H 1.08994 * 109.47218 * 59.99864 * 9 7 2 19 19 H 1.08996 * 109.47006 * 299.99656 * 9 7 2 20 20 H 1.08002 * 119.94842 * 0.02562 * 11 10 9 21 21 H 1.07997 * 119.52004 * 179.74169 * 12 11 10 22 22 H 1.08002 * 120.07683 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6504 -4.1359 1.1727 12 6 3.5311 -5.1668 1.1651 13 7 3.9717 -5.6821 0.0206 14 6 3.5655 -5.2070 -1.1307 15 6 2.6477 -4.1322 -1.1641 16 8 2.2620 -3.6812 -2.2297 17 1 -0.4850 0.8400 -0.0004 18 1 0.6246 -2.5571 -0.8896 19 1 0.6240 -2.5567 0.8903 20 1 2.3032 -3.7304 2.1115 21 1 3.8836 -5.5725 2.1018 22 1 3.9311 -5.6352 -2.0523 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306398139.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:17 Heat of formation + Delta-G solvation = -18.148412 kcal Electronic energy + Delta-G solvation = -10328.503061 eV Core-core repulsion = 8269.268261 eV Total energy + Delta-G solvation = -2059.234799 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.48830 -38.42736 -36.90288 -34.80533 -31.21537 -30.02099 -26.51653 -25.06375 -23.72487 -19.25771 -19.01905 -18.42190 -17.45294 -16.75737 -16.51678 -15.27462 -15.14814 -14.53292 -14.13640 -13.63304 -13.49077 -13.25044 -12.70599 -12.47746 -12.31166 -12.20426 -11.33181 -10.77789 -10.26770 -9.02987 -8.39360 -6.56767 -0.25135 0.81676 1.35310 1.38963 1.46484 1.73590 2.30419 2.78370 2.93285 3.47879 3.54964 4.00672 4.37915 4.47815 4.73301 4.89231 5.05784 5.41784 5.54140 5.73063 5.94550 6.48537 6.80151 6.91954 7.15048 8.68654 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.062810 B = 0.012314 C = 0.011898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.678518 B = 2273.355475 C = 2352.686033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.973 3.027 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.561 4.561 8 H 0.055 0.945 9 C 0.231 3.769 10 N -0.466 5.466 11 C 0.118 3.882 12 C -0.067 4.067 13 N -0.395 5.395 14 C 0.003 3.997 15 C 0.446 3.554 16 O -0.594 6.594 17 H 0.274 0.726 18 H 0.020 0.980 19 H 0.060 0.940 20 H 0.199 0.801 21 H 0.214 0.786 22 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -6.416 5.749 10.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.181 4.181 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.599 4.599 8 H 0.073 0.927 9 C 0.111 3.889 10 N -0.174 5.174 11 C -0.016 4.016 12 C -0.210 4.210 13 N -0.109 5.109 14 C -0.181 4.181 15 C 0.247 3.753 16 O -0.477 6.477 17 H 0.083 0.917 18 H 0.038 0.962 19 H 0.078 0.922 20 H 0.216 0.784 21 H 0.230 0.770 22 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.473 -6.595 5.262 10.057 hybrid contribution -0.572 1.650 -0.332 1.777 sum 4.902 -4.945 4.931 8.532 Atomic orbital electron populations 1.69997 1.07471 1.29031 1.49042 1.25792 0.95852 1.03009 0.93419 0.85380 0.78320 0.77517 0.79137 1.20509 1.19840 1.18127 1.21387 0.93227 0.91050 1.54199 0.92715 1.19601 0.87819 0.82654 0.98783 1.46468 1.35366 1.28049 1.07531 1.23848 0.93359 0.93055 0.91359 1.22566 1.01755 0.98650 0.98064 1.67595 1.19200 1.25393 0.98726 1.24648 0.98951 0.95867 0.98638 1.19204 0.85498 0.86905 0.83709 1.90882 1.61860 1.65087 1.29827 0.91710 0.96183 0.92226 0.78427 0.76963 0.78553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.23 13.29 21.45 0.28 -51.95 14 2 C 0.02 1.13 5.46 84.65 0.46 1.59 14 3 Si 0.97 42.75 29.54 68.60 2.03 44.78 14 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 14 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 14 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 14 7 C -0.56 -30.89 9.39 25.60 0.24 -30.65 14 8 H 0.05 3.02 7.81 -2.91 -0.02 3.00 14 9 C 0.23 11.76 5.17 85.64 0.44 12.20 14 10 N -0.47 -19.88 2.59 -653.32 -1.69 -21.57 14 11 C 0.12 3.61 10.37 83.44 0.87 4.47 14 12 C -0.07 -1.76 11.09 83.90 0.93 -0.83 14 13 N -0.39 -12.23 10.43 -195.06 -2.03 -14.26 14 14 C 0.00 0.10 11.24 85.59 0.96 1.06 14 15 C 0.45 20.09 7.46 84.97 0.63 20.73 14 16 O -0.59 -32.32 16.79 -5.23 -0.09 -32.41 14 17 H 0.27 14.59 8.31 -92.71 -0.77 13.82 14 18 H 0.02 1.18 7.47 -2.39 -0.02 1.16 14 19 H 0.06 2.89 8.05 -2.39 -0.02 2.87 14 20 H 0.20 4.62 8.06 -2.91 -0.02 4.60 14 21 H 0.21 3.50 8.06 -2.91 -0.02 3.47 14 22 H 0.20 5.82 8.06 -2.91 -0.02 5.80 14 Total: -1.00 -68.81 209.93 4.25 -64.56 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 1.22 Total: 2.28 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 4.54 Total: 8.58 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -3.44 Total: -87.78 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.09 Total: -32.41 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -68.81 4.25 -64.56 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306398139.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.409 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds