Wall clock time and date at job start Mon Mar 30 2020 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46775 * 127.23659 * 359.68477 * 9 7 2 11 11 C 1.51059 * 107.28812 * 179.85535 * 10 9 7 12 12 C 1.30624 * 109.94732 * 0.43522 * 11 10 9 13 13 C 1.51666 * 109.37642 * 179.73993 * 12 11 10 14 14 N 1.48086 * 105.34353 * 342.69887 * 13 12 11 15 15 C 1.48086 * 102.66922 * 26.67774 * 14 13 12 16 16 C 1.46776 * 127.23543 * 180.02562 * 9 7 2 17 17 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 18 18 H 1.08996 * 109.88110 * 299.42614 * 10 9 7 19 19 H 1.08999 * 109.88018 * 60.57933 * 10 9 7 20 20 H 1.08995 * 110.27591 * 101.66514 * 13 12 11 21 21 H 1.08998 * 110.27248 * 223.73314 * 13 12 11 22 22 H 1.00900 * 111.00051 * 268.00879 * 14 13 12 23 23 H 1.09002 * 110.27061 * 214.35570 * 15 14 13 24 24 H 1.08996 * 110.26884 * 92.28753 * 15 14 13 25 25 H 1.09004 * 109.87783 * 299.41960 * 16 9 7 26 26 H 1.08995 * 109.88418 * 60.57461 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 -0.1305 -2.5729 0.0177 11 6 -0.3943 -4.0603 0.0153 12 6 0.7369 -4.7134 0.0119 13 6 0.4573 -6.2041 0.0161 14 7 -0.9533 -6.3369 0.4468 15 6 -1.5454 -5.0478 0.0221 16 6 1.8934 -3.7415 0.0055 17 1 -0.4849 0.8401 0.0004 18 1 -0.5536 -2.1207 0.9146 19 1 -0.5696 -2.1194 -0.8709 20 1 0.5867 -6.6154 -0.9850 21 1 1.1166 -6.7101 0.7212 22 1 -1.0166 -6.4518 1.4473 23 1 -2.3101 -4.7314 0.7315 24 1 -1.9708 -5.1387 -0.9773 25 1 2.4977 -3.8905 -0.8894 26 1 2.5046 -3.8866 0.8963 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306436324.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:12 Heat of formation + Delta-G solvation = 52.006280 kcal Electronic energy + Delta-G solvation = -10673.938030 eV Core-core repulsion = 8753.578461 eV Total energy + Delta-G solvation = -1920.359569 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.00810 -37.40139 -34.15375 -30.96721 -30.16551 -27.29491 -27.09986 -23.64091 -21.85506 -19.22801 -18.62950 -17.38951 -16.75795 -16.14884 -15.80047 -14.83617 -14.51597 -13.88291 -13.53218 -13.33147 -13.11480 -12.85169 -12.72983 -12.25193 -12.20440 -11.97440 -11.85610 -11.02359 -10.09247 -9.64725 -8.86086 -7.96885 -5.34627 1.10555 1.43662 1.48675 1.55116 2.41777 3.14032 3.25248 3.27194 3.35562 4.13670 4.37792 4.51632 4.58284 4.64386 4.71241 4.87257 4.93329 5.15274 5.25431 5.33978 5.47009 5.50732 5.98680 6.06327 6.29296 6.95697 7.60591 8.31838 9.16776 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.098439 B = 0.011217 C = 0.010227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.371672 B = 2495.722308 C = 2737.153635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.065 4.065 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.627 5.627 10 C 0.235 3.765 11 C -0.215 4.215 12 C -0.211 4.211 13 C 0.107 3.893 14 N -0.643 5.643 15 C 0.103 3.897 16 C 0.184 3.816 17 H 0.252 0.748 18 H 0.017 0.983 19 H 0.018 0.982 20 H 0.101 0.899 21 H 0.097 0.903 22 H 0.348 0.652 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.037 0.963 26 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 -9.849 0.972 9.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.258 4.258 3 Si 0.819 3.181 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.354 5.354 10 C 0.109 3.891 11 C -0.218 4.218 12 C -0.213 4.213 13 C -0.022 4.022 14 N -0.268 5.268 15 C -0.027 4.027 16 C 0.059 3.941 17 H 0.061 0.939 18 H 0.035 0.965 19 H 0.036 0.964 20 H 0.119 0.881 21 H 0.115 0.885 22 H 0.164 0.836 23 H 0.105 0.895 24 H 0.115 0.885 25 H 0.055 0.945 26 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.458 -10.109 0.426 10.129 hybrid contribution 0.678 1.997 0.573 2.185 sum 0.220 -8.113 1.000 8.177 Atomic orbital electron populations 1.70165 1.06634 1.26026 1.57306 1.25837 0.96780 1.01543 1.01666 0.84959 0.77044 0.77616 0.78510 1.19865 1.21667 1.19871 1.19389 0.91139 0.82597 1.44661 0.89137 1.44442 1.02129 1.01209 1.87604 1.19012 0.84809 0.87536 0.97738 1.24647 0.99020 0.96655 1.01461 1.24244 0.95934 0.98220 1.02912 1.21413 0.89829 0.87705 1.03289 1.64001 1.11629 1.30286 1.20925 1.21371 0.93705 0.84696 1.02928 1.19592 0.93182 0.82898 0.98476 0.93939 0.96486 0.96442 0.88115 0.88455 0.83626 0.89538 0.88457 0.94525 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.90 10.56 21.65 0.23 -58.67 15 2 C -0.07 -3.80 5.49 84.86 0.47 -3.33 15 3 Si 0.99 46.13 29.55 68.60 2.03 48.16 15 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 15 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 15 7 C -0.25 -14.62 10.36 84.03 0.87 -13.75 15 8 H 0.09 4.96 7.83 -2.91 -0.02 4.94 15 9 N -0.63 -34.86 3.43 -707.94 -2.43 -37.29 15 10 C 0.23 12.59 5.45 85.69 0.47 13.06 15 11 C -0.22 -8.85 7.17 -15.68 -0.11 -8.97 15 12 C -0.21 -7.98 7.17 -15.68 -0.11 -8.09 15 13 C 0.11 2.88 7.49 85.64 0.64 3.52 15 14 N -0.64 -16.42 7.81 -512.86 -4.00 -20.42 15 15 C 0.10 3.13 7.49 85.64 0.64 3.77 15 16 C 0.18 8.24 7.32 85.70 0.63 8.86 15 17 H 0.25 14.96 8.31 -92.71 -0.77 14.19 15 18 H 0.02 1.02 7.56 -2.39 -0.02 1.00 15 19 H 0.02 1.05 7.52 -2.39 -0.02 1.03 15 20 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 21 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 22 H 0.35 7.64 8.92 -89.69 -0.80 6.84 15 23 H 0.09 2.40 8.14 -2.39 -0.02 2.38 15 24 H 0.10 2.83 8.14 -2.39 -0.02 2.81 15 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 Total: -1.00 -67.53 219.60 -0.31 -67.84 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.37 Total: 5.32 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 3.49 Total: -4.93 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -6.20 Total: -116.39 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -67.53 -0.31 -67.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306436324.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.847 kcal (2) G-P(sol) polarization free energy of solvation -67.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds