Wall clock time and date at job start Mon Mar 30 2020 01:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00024 * 2 1 4 4 H 1.48496 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46856 * 299.99565 * 3 2 1 6 6 H 1.48499 * 109.47115 * 59.99933 * 3 2 1 7 7 C 1.37876 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99787 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.36852 * 57.65050 * 9 7 2 11 11 C 1.54608 * 110.51436 * 295.21945 * 9 7 2 12 12 C 1.55979 * 104.46557 * 241.50354 * 11 9 7 13 13 H 1.08999 * 116.08138 * 199.12845 * 12 11 9 14 14 C 1.55963 * 104.30622 * 69.20852 * 12 11 9 15 15 C 1.52174 * 104.86932 * 289.61875 * 14 12 11 16 16 O 1.20758 * 127.32534 * 180.32565 * 15 14 12 17 17 C 1.53515 * 105.34442 * 0.30294 * 15 14 12 18 18 H 1.08995 * 116.44046 * 199.35915 * 17 15 14 19 19 C 1.56934 * 100.84144 * 325.95746 * 17 15 14 20 20 H 0.97000 * 119.99609 * 0.02562 * 1 2 3 21 21 H 1.09000 * 110.43598 * 0.25449 * 11 9 7 22 22 H 1.09001 * 110.43349 * 122.76025 * 11 9 7 23 23 H 1.09002 * 110.35922 * 48.46824 * 14 12 11 24 24 H 1.09000 * 110.35868 * 170.66120 * 14 12 11 25 25 H 1.09000 * 112.08646 * 170.05873 * 19 17 15 26 26 H 1.08997 * 112.08491 * 296.74230 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.5880 -2.5545 -0.8630 11 6 0.4452 -2.6595 1.3103 12 6 1.0376 -3.9386 1.9780 13 1 0.4157 -4.4155 2.7356 14 6 2.4741 -3.5156 2.4140 15 6 3.2499 -3.3696 1.1131 16 8 4.4098 -3.0596 0.9831 17 6 2.2446 -3.7008 0.0012 18 1 2.6642 -3.9711 -0.9678 19 6 1.3737 -4.7985 0.7080 20 1 -0.4849 0.8401 -0.0004 21 1 0.5894 -1.7922 1.9545 22 1 -0.6133 -2.8001 1.0911 23 1 2.4443 -2.5650 2.9466 24 1 2.9227 -4.2866 3.0405 25 1 0.4815 -5.0467 0.1332 26 1 1.9556 -5.6861 0.9562 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307042681.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:20 Heat of formation + Delta-G solvation = -43.837935 kcal Electronic energy + Delta-G solvation = -11059.683880 eV Core-core repulsion = 9102.875443 eV Total energy + Delta-G solvation = -1956.808437 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.82365 -36.57655 -32.78048 -29.20417 -27.71931 -26.69678 -23.91984 -20.22600 -19.38574 -17.80497 -16.14610 -15.68834 -15.03450 -14.19837 -13.92632 -13.00821 -12.65812 -12.10109 -11.77885 -11.63643 -11.04042 -10.79421 -10.71773 -10.46288 -10.36146 -9.84842 -9.68993 -9.25561 -8.96210 -8.48826 -8.25685 -6.07492 -4.11057 2.93076 3.28831 3.36951 3.45102 4.42208 4.93296 5.13743 5.29291 5.45872 5.54752 5.86051 5.96409 6.07767 6.28368 6.34521 6.49972 6.60789 6.70076 6.74259 6.96650 7.21126 7.54537 7.78304 7.89490 8.33670 8.45096 8.94220 9.55016 11.01548 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.050310 B = 0.017510 C = 0.014935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.411846 B = 1598.689339 C = 1874.385571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.887 3.113 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.061 3.939 10 H 0.041 0.959 11 C -0.094 4.094 12 C -0.109 4.109 13 H 0.092 0.908 14 C -0.169 4.169 15 C 0.396 3.604 16 O -0.473 6.473 17 C -0.156 4.156 18 H 0.095 0.905 19 C -0.122 4.122 20 H 0.260 0.740 21 H 0.066 0.934 22 H 0.045 0.955 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 -6.721 3.225 7.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.079 0.921 9 C 0.042 3.958 10 H 0.059 0.941 11 C -0.132 4.132 12 C -0.127 4.127 13 H 0.110 0.890 14 C -0.207 4.207 15 C 0.274 3.726 16 O -0.348 6.348 17 C -0.176 4.176 18 H 0.113 0.887 19 C -0.159 4.159 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.112 0.888 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.548 -6.416 3.160 7.173 hybrid contribution 0.281 1.056 0.005 1.093 sum 0.829 -5.359 3.165 6.279 Atomic orbital electron populations 1.69980 1.05858 1.26578 1.49994 1.24940 0.94801 0.99082 0.94777 0.86599 0.80554 0.83769 0.77640 1.19569 1.20884 1.20947 1.21333 0.93270 0.90427 1.51224 0.92079 1.19635 0.91426 0.90164 0.94571 0.94090 1.22727 0.98014 0.94024 0.98456 1.23640 0.94780 0.97951 0.96342 0.89010 1.23023 0.96957 1.02777 0.97913 1.25201 0.86452 0.68180 0.92799 1.90287 1.18605 1.38032 1.87829 1.24343 0.97313 0.98622 0.97280 0.88726 1.23512 0.99272 0.96014 0.97125 0.92995 0.91539 0.93632 0.88759 0.90417 0.90789 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.05 12.64 55.43 0.70 -24.35 15 2 C 0.07 1.84 5.17 -17.82 -0.09 1.75 15 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 15 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 15 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 7 C -0.52 -14.44 7.61 -34.44 -0.26 -14.70 15 8 H 0.06 1.77 6.58 -52.49 -0.35 1.42 15 9 C 0.06 1.46 2.57 -89.36 -0.23 1.24 15 10 H 0.04 1.07 8.14 -51.93 -0.42 0.64 15 11 C -0.09 -2.06 5.10 -24.29 -0.12 -2.18 15 12 C -0.11 -1.89 5.25 -85.26 -0.45 -2.33 15 13 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 14 C -0.17 -3.08 6.10 -25.57 -0.16 -3.24 15 15 C 0.40 8.59 5.61 -26.89 -0.15 8.44 15 16 O -0.47 -11.57 17.57 6.00 0.11 -11.47 15 17 C -0.16 -3.24 4.85 -86.66 -0.42 -3.66 15 18 H 0.09 1.89 8.14 -51.93 -0.42 1.47 15 19 C -0.12 -2.03 6.45 -22.42 -0.14 -2.18 15 20 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.07 1.61 7.20 -51.93 -0.37 1.24 15 22 H 0.04 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.09 1.80 7.84 -51.93 -0.41 1.39 15 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 LS Contribution 216.69 15.07 3.27 3.27 Total: -1.00 -29.50 216.69 -6.20 -35.70 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -3.22 Total: -2.97 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.03 Total: -16.87 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.70 Total: -24.35 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.11 Total: -11.47 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -29.50 -6.20 -35.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307042681.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.142 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds