Wall clock time and date at job start Mon Mar 30 2020 01:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 O 1.42902 * 109.47440 * 300.28198 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.38598 * 120.79996 * 84.72722 * 12 9 7 14 14 N 1.32328 * 119.10568 * 179.72344 * 13 12 9 15 15 C 1.31799 * 120.81693 * 0.55654 * 14 13 12 16 16 N 1.31794 * 121.75506 * 359.71317 * 15 14 13 17 17 C 1.32330 * 120.81508 * 0.02562 * 16 15 14 18 18 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 19 19 H 0.96704 * 113.99514 * 299.99782 * 11 9 7 20 20 H 1.08005 * 120.44153 * 359.97438 * 13 12 9 21 21 H 1.07999 * 119.12118 * 179.72932 * 15 14 13 22 22 H 1.08007 * 120.44663 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6244 -2.5609 -0.8844 11 8 0.4296 -2.5696 1.1725 12 6 2.2305 -3.6445 0.0104 13 6 2.7750 -4.1075 1.1979 14 7 3.6276 -5.1189 1.1638 15 6 3.9681 -5.6768 0.0193 16 7 3.4749 -5.2596 -1.1295 17 6 2.6132 -4.2563 -1.1729 18 1 -0.4850 0.8400 0.0004 19 1 0.9219 -2.5206 2.0035 20 1 2.5039 -3.6515 2.1387 21 1 4.6697 -6.4978 0.0230 22 1 2.2131 -3.9189 -2.1177 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307159437.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:34 Heat of formation + Delta-G solvation = -29.459827 kcal Electronic energy + Delta-G solvation = -10307.998581 eV Core-core repulsion = 8248.273282 eV Total energy + Delta-G solvation = -2059.725299 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.85866 -37.87573 -34.60483 -34.30245 -33.06301 -28.90232 -25.87481 -25.37049 -22.93742 -19.22055 -18.56566 -18.33746 -16.99855 -16.71826 -15.63197 -15.08988 -14.76909 -14.51623 -14.31624 -13.57010 -13.08109 -12.85497 -12.58495 -12.13193 -11.70256 -11.30794 -10.83787 -10.47588 -10.19730 -10.04946 -8.18954 -6.46409 0.08638 0.13186 1.39614 1.42915 1.53478 2.36623 2.90677 3.06638 3.31419 3.34079 3.81571 4.05889 4.14914 4.33889 4.64263 4.94066 5.49847 5.54114 5.62776 5.93753 6.02850 6.62676 7.13875 7.25770 7.42024 8.84540 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.062636 B = 0.012579 C = 0.011902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.918970 B = 2225.355059 C = 2352.042752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.035 3.965 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.577 4.577 8 H 0.053 0.947 9 C 0.272 3.728 10 H 0.048 0.952 11 O -0.572 6.572 12 C -0.187 4.187 13 C 0.141 3.859 14 N -0.529 5.529 15 C 0.261 3.739 16 N -0.530 5.530 17 C 0.136 3.864 18 H 0.265 0.735 19 H 0.361 0.639 20 H 0.176 0.824 21 H 0.227 0.773 22 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 -5.213 0.653 7.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.168 4.168 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.615 4.615 8 H 0.071 0.929 9 C 0.213 3.787 10 H 0.066 0.934 11 O -0.377 6.377 12 C -0.191 4.191 13 C -0.024 4.024 14 N -0.243 5.243 15 C -0.026 4.026 16 N -0.243 5.243 17 C -0.029 4.029 18 H 0.075 0.925 19 H 0.207 0.793 20 H 0.193 0.807 21 H 0.243 0.757 22 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.398 -5.934 0.200 8.024 hybrid contribution 0.041 1.721 0.270 1.742 sum 5.439 -4.213 0.470 6.896 Atomic orbital electron populations 1.70174 1.07429 1.27745 1.47479 1.25791 0.95444 1.02547 0.93059 0.85506 0.78855 0.79264 0.77926 1.19361 1.20320 1.20235 1.21750 0.93012 0.91534 1.55172 0.92890 1.18107 0.86348 0.88053 0.86149 0.93436 1.86580 1.38712 1.96263 1.16127 1.22859 1.00722 0.99322 0.96185 1.23134 0.89762 0.90661 0.98854 1.68426 1.14119 1.10123 1.31629 1.25544 0.96347 0.98142 0.82573 1.68425 1.10870 1.13627 1.31397 1.23245 0.91284 0.89542 0.98866 0.92549 0.79307 0.80708 0.75690 0.80820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.23 12.83 21.45 0.28 -49.95 14 2 C 0.04 1.87 5.40 84.65 0.46 2.33 14 3 Si 0.96 41.51 29.54 68.60 2.03 43.54 14 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 14 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 14 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 14 7 C -0.58 -29.87 8.75 25.60 0.22 -29.65 14 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 14 9 C 0.27 13.05 3.10 29.10 0.09 13.14 14 10 H 0.05 2.50 8.07 -2.38 -0.02 2.48 14 11 O -0.57 -27.63 12.53 -148.98 -1.87 -29.50 14 12 C -0.19 -7.51 4.97 -19.69 -0.10 -7.60 14 13 C 0.14 5.14 10.60 84.70 0.90 6.04 14 14 N -0.53 -17.98 10.44 -200.04 -2.09 -20.07 14 15 C 0.26 8.05 12.29 180.88 2.22 10.27 14 16 N -0.53 -18.11 10.44 -200.04 -2.09 -20.20 14 17 C 0.14 5.02 10.99 84.70 0.93 5.95 14 18 H 0.27 14.10 8.31 -92.71 -0.77 13.33 14 19 H 0.36 14.83 7.49 -74.05 -0.55 14.28 14 20 H 0.18 5.68 6.75 -2.91 -0.02 5.66 14 21 H 0.23 4.84 8.06 -2.91 -0.02 4.81 14 22 H 0.17 5.85 8.06 -2.91 -0.02 5.83 14 Total: -1.00 -61.07 207.66 1.67 -59.40 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.69 Total: 16.31 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 4.72 Total: 0.48 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -3.90 Total: -90.22 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -1.87 Total: -29.50 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -61.07 1.67 -59.40 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307159437.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.937 kcal (2) G-P(sol) polarization free energy of solvation -61.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds