Wall clock time and date at job start Mon Mar 30 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47038 * 251.12497 * 3 2 1 5 5 H 1.09002 * 110.89102 * 57.42727 * 4 3 2 6 6 C 1.55151 * 111.03953 * 181.33344 * 4 3 2 7 7 C 1.54336 * 103.02378 * 153.39534 * 6 4 3 8 8 N 1.47016 * 107.26287 * 338.13897 * 7 6 4 9 9 C 1.36943 * 125.64813 * 178.84778 * 8 7 6 10 10 H 1.07996 * 120.00233 * 189.75410 * 9 8 7 11 11 C 1.38816 * 119.99574 * 9.75120 * 9 8 7 12 12 N 1.31614 * 119.99724 * 195.14049 * 11 9 8 13 13 Si 1.86795 * 120.00127 * 15.15069 * 11 9 8 14 14 H 1.48501 * 109.47366 * 174.48596 * 13 11 9 15 15 H 1.48503 * 109.47638 * 54.48364 * 13 11 9 16 16 H 1.48506 * 109.46908 * 294.48561 * 13 11 9 17 17 C 1.47425 * 108.70561 * 358.58692 * 8 7 6 18 18 H 1.08993 * 109.47006 * 131.12658 * 3 2 1 19 19 H 1.09002 * 109.47332 * 11.12333 * 3 2 1 20 20 H 1.08998 * 110.72276 * 271.95448 * 6 4 3 21 21 H 1.09000 * 110.71922 * 35.22650 * 6 4 3 22 22 H 1.09008 * 109.99015 * 218.66649 * 7 6 4 23 23 H 1.08998 * 109.77984 * 97.49775 * 7 6 4 24 24 H 0.97003 * 119.99982 * 2.98429 * 12 11 9 25 25 H 1.08997 * 110.36537 * 143.18874 * 17 8 7 26 26 H 1.08997 * 110.36694 * 265.51783 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4675 1.3649 5 1 2.7307 -0.1670 2.1622 6 6 4.6683 0.5139 1.3943 7 6 4.9640 1.5871 2.4634 8 7 3.7647 2.4296 2.5791 9 6 3.6108 3.4853 3.4376 10 1 2.6410 3.9440 3.5611 11 6 4.7016 3.9659 4.1491 12 7 4.5156 4.7642 5.1789 13 14 6.4333 3.4799 3.6449 14 1 7.4170 4.2243 4.4716 15 1 6.6422 3.8081 2.2117 16 1 6.6175 2.0207 3.8504 17 6 2.7575 1.9535 1.6136 18 1 2.9710 0.6767 -0.7741 19 1 2.9718 -1.0075 -0.1983 20 1 5.0775 -0.4519 1.6907 21 1 5.0634 0.8205 0.4258 22 1 5.8154 2.1945 2.1561 23 1 5.1738 1.1074 3.4194 24 1 3.6155 4.9820 5.4673 25 1 1.7568 2.0353 2.0380 26 1 2.8243 2.5205 0.6851 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307195935.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:52 Heat of formation + Delta-G solvation = 51.419023 kcal Electronic energy + Delta-G solvation = -10556.934828 eV Core-core repulsion = 8636.549794 eV Total energy + Delta-G solvation = -1920.385034 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.37780 -36.31332 -33.29203 -31.27384 -29.11333 -26.80905 -23.57704 -20.82060 -20.08710 -17.62778 -17.29015 -15.55444 -15.20748 -14.32929 -13.73201 -13.39813 -12.92649 -12.65619 -12.54034 -12.37495 -11.63105 -11.45644 -11.11348 -10.89736 -10.60630 -10.38909 -9.97222 -9.33342 -8.96246 -8.69170 -7.03252 -6.30726 -3.20790 2.85147 2.88169 3.41522 3.49656 3.71987 4.06293 4.63035 4.84366 4.95657 5.13766 5.24243 5.44504 5.53702 5.64997 5.70583 5.95704 6.09935 6.17011 6.39047 6.52034 6.69975 6.76351 7.65919 7.68525 8.34840 9.05926 9.57378 10.23916 11.20656 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.067614 B = 0.012296 C = 0.010687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.017753 B = 2276.612107 C = 2619.256507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.213 3.787 3 C -0.016 4.016 4 C -0.103 4.103 5 H 0.086 0.914 6 C -0.121 4.121 7 C 0.107 3.893 8 N -0.613 5.613 9 C -0.324 4.324 10 H 0.077 0.923 11 C -0.024 4.024 12 N -0.929 5.929 13 Si 1.074 2.926 14 H -0.302 1.302 15 H -0.298 1.298 16 H -0.285 1.285 17 C 0.138 3.862 18 H 0.109 0.891 19 H 0.109 0.891 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.030 0.970 23 H 0.047 0.953 24 H 0.261 0.739 25 H 0.042 0.958 26 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.890 -10.395 -9.861 14.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.104 4.104 3 C -0.056 4.056 4 C -0.124 4.124 5 H 0.104 0.896 6 C -0.159 4.159 7 C -0.017 4.017 8 N -0.341 5.341 9 C -0.451 4.451 10 H 0.095 0.905 11 C -0.223 4.223 12 N -0.571 5.571 13 Si 0.909 3.091 14 H -0.231 1.231 15 H -0.227 1.227 16 H -0.212 1.212 17 C 0.012 3.988 18 H 0.127 0.873 19 H 0.127 0.873 20 H 0.092 0.908 21 H 0.090 0.910 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.754 -10.075 -9.430 13.910 hybrid contribution -1.254 -0.125 -0.399 1.322 sum 0.500 -10.200 -9.829 14.173 Atomic orbital electron populations 1.81187 1.13220 1.09241 1.08863 1.29281 0.95414 0.92824 0.92924 1.19325 0.81433 1.04626 1.00242 1.22395 0.96482 0.98917 0.94594 0.89562 1.22616 0.94088 0.99323 0.99852 1.22017 0.91004 0.91705 0.96999 1.44814 1.12116 1.34640 1.42540 1.20178 0.97264 1.09107 1.18578 0.90523 1.25879 1.03100 0.97597 0.95700 1.70901 1.24099 1.38360 1.23690 0.83784 0.76086 0.75089 0.74182 1.23082 1.22684 1.21248 1.21645 0.93702 0.90450 0.93039 0.87269 0.87339 0.90840 0.91010 0.95256 0.93547 0.92903 0.93982 0.95644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.28 18.54 42.15 0.78 -6.50 15 2 C 0.21 2.82 14.98 -20.76 -0.31 2.51 15 3 C -0.02 -0.15 5.24 -29.52 -0.15 -0.31 15 4 C -0.10 -1.44 3.05 -88.47 -0.27 -1.71 15 5 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 6 C -0.12 -1.70 6.42 -24.89 -0.16 -1.86 15 7 C 0.11 2.22 4.61 -3.06 -0.01 2.21 15 8 N -0.61 -14.89 3.33 -170.07 -0.57 -15.46 15 9 C -0.32 -9.40 10.56 -15.05 -0.16 -9.56 15 10 H 0.08 2.36 8.06 -52.49 -0.42 1.94 15 11 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 15 12 N -0.93 -29.52 13.71 55.49 0.76 -28.76 15 13 Si 1.07 26.63 24.52 -169.99 -4.17 22.46 15 14 H -0.30 -7.69 7.11 56.52 0.40 -7.29 15 15 H -0.30 -7.07 6.82 56.52 0.39 -6.68 15 16 H -0.29 -6.36 5.41 56.52 0.31 -6.06 15 17 C 0.14 2.66 6.25 -2.53 -0.02 2.65 15 18 H 0.11 0.89 8.10 -51.93 -0.42 0.47 15 19 H 0.11 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.07 0.86 8.04 -51.93 -0.42 0.45 15 22 H 0.03 0.65 3.89 -51.92 -0.20 0.45 15 23 H 0.05 1.01 6.70 -51.93 -0.35 0.67 15 24 H 0.26 8.23 8.73 -40.82 -0.36 7.87 15 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.03 0.48 8.00 -51.93 -0.42 0.06 15 LS Contribution 220.12 15.07 3.32 3.32 Total: -1.00 -33.75 220.12 -4.24 -37.99 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: -3.18 Total: -6.17 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.18 Total: -6.87 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.98 Total: -50.71 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -4.17 Total: 22.46 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -33.75 -4.24 -37.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307195935.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.405 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds