Wall clock time and date at job start Mon Mar 30 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47038 * 251.12497 * 3 2 1 5 5 H 1.09002 * 110.89102 * 57.42727 * 4 3 2 6 6 C 1.55151 * 111.03953 * 181.33344 * 4 3 2 7 7 C 1.54336 * 103.02378 * 153.39534 * 6 4 3 8 8 N 1.47016 * 107.26287 * 338.13897 * 7 6 4 9 9 C 1.36943 * 125.64813 * 178.84778 * 8 7 6 10 10 H 1.07996 * 120.00233 * 189.75410 * 9 8 7 11 11 C 1.38816 * 119.99574 * 9.75120 * 9 8 7 12 12 N 1.31614 * 119.99724 * 195.14049 * 11 9 8 13 13 Si 1.86795 * 120.00127 * 15.15069 * 11 9 8 14 14 H 1.48501 * 109.47366 * 174.48596 * 13 11 9 15 15 H 1.48503 * 109.47638 * 54.48364 * 13 11 9 16 16 H 1.48506 * 109.46908 * 294.48561 * 13 11 9 17 17 C 1.47425 * 108.70561 * 358.58692 * 8 7 6 18 18 H 1.08993 * 109.47006 * 131.12658 * 3 2 1 19 19 H 1.09002 * 109.47332 * 11.12333 * 3 2 1 20 20 H 1.08998 * 110.72276 * 271.95448 * 6 4 3 21 21 H 1.09000 * 110.71922 * 35.22650 * 6 4 3 22 22 H 1.09008 * 109.99015 * 218.66649 * 7 6 4 23 23 H 1.08998 * 109.77984 * 97.49775 * 7 6 4 24 24 H 0.97003 * 119.99982 * 2.98429 * 12 11 9 25 25 H 1.08997 * 110.36537 * 143.18874 * 17 8 7 26 26 H 1.08997 * 110.36694 * 265.51783 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4675 1.3649 5 1 2.7307 -0.1670 2.1622 6 6 4.6683 0.5139 1.3943 7 6 4.9640 1.5871 2.4634 8 7 3.7647 2.4296 2.5791 9 6 3.6108 3.4853 3.4376 10 1 2.6410 3.9440 3.5611 11 6 4.7016 3.9659 4.1491 12 7 4.5156 4.7642 5.1789 13 14 6.4333 3.4799 3.6449 14 1 7.4170 4.2243 4.4716 15 1 6.6422 3.8081 2.2117 16 1 6.6175 2.0207 3.8504 17 6 2.7575 1.9535 1.6136 18 1 2.9710 0.6767 -0.7741 19 1 2.9718 -1.0075 -0.1983 20 1 5.0775 -0.4519 1.6907 21 1 5.0634 0.8205 0.4258 22 1 5.8154 2.1945 2.1561 23 1 5.1738 1.1074 3.4194 24 1 3.6155 4.9820 5.4673 25 1 1.7568 2.0353 2.0380 26 1 2.8243 2.5205 0.6851 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307195935.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:52 Heat of formation + Delta-G solvation = 26.443871 kcal Electronic energy + Delta-G solvation = -10558.017832 eV Core-core repulsion = 8636.549794 eV Total energy + Delta-G solvation = -1921.468038 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.75523 -37.51800 -35.09371 -32.99866 -30.59227 -28.26986 -25.34032 -22.53239 -21.41117 -19.56133 -18.47564 -17.09094 -16.65166 -15.65022 -15.27538 -15.09495 -14.27427 -14.24279 -13.90367 -13.66195 -13.09936 -12.99045 -12.52172 -12.24864 -12.05914 -11.62347 -11.49980 -11.30240 -10.97673 -10.61032 -9.06735 -8.67430 -5.47062 1.43879 1.55497 1.77213 1.83624 1.90057 2.59433 3.11421 3.15766 3.38248 3.86981 3.94634 4.08818 4.43888 4.52643 4.71157 4.78227 4.90494 4.96584 5.09567 5.14874 5.33185 5.47878 5.57833 6.10364 6.69006 6.84890 7.47572 8.11070 8.86132 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.067614 B = 0.012296 C = 0.010687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.017753 B = 2276.612107 C = 2619.256507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.235 3.765 3 C -0.005 4.005 4 C -0.087 4.087 5 H 0.081 0.919 6 C -0.103 4.103 7 C 0.089 3.911 8 N -0.639 5.639 9 C -0.318 4.318 10 H 0.034 0.966 11 C -0.085 4.085 12 N -0.967 5.967 13 Si 1.118 2.882 14 H -0.317 1.317 15 H -0.278 1.278 16 H -0.242 1.242 17 C 0.126 3.874 18 H 0.138 0.862 19 H 0.162 0.838 20 H 0.113 0.887 21 H 0.105 0.895 22 H 0.028 0.972 23 H 0.032 0.968 24 H 0.243 0.757 25 H 0.011 0.989 26 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 -13.210 -12.414 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.081 4.081 3 C -0.044 4.044 4 C -0.108 4.108 5 H 0.100 0.900 6 C -0.141 4.141 7 C -0.035 4.035 8 N -0.367 5.367 9 C -0.447 4.447 10 H 0.052 0.948 11 C -0.277 4.277 12 N -0.611 5.611 13 Si 0.944 3.056 14 H -0.247 1.247 15 H -0.205 1.205 16 H -0.166 1.166 17 C 0.001 3.999 18 H 0.156 0.844 19 H 0.180 0.820 20 H 0.132 0.868 21 H 0.124 0.876 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.838 -12.939 -12.027 18.078 hybrid contribution -2.035 0.798 0.408 2.223 sum 1.803 -12.141 -11.619 16.902 Atomic orbital electron populations 1.81219 1.15503 1.11655 1.10793 1.30028 0.96141 0.90841 0.91108 1.19604 0.78536 1.08249 0.98028 1.22245 0.97054 0.94329 0.97160 0.90015 1.22650 0.93448 0.98791 0.99164 1.22299 0.89385 0.92882 0.98938 1.44934 1.14966 1.33934 1.42819 1.20056 0.95432 1.10165 1.19051 0.94841 1.27396 1.07509 0.97552 0.95241 1.71022 1.22904 1.41113 1.26060 0.83335 0.70546 0.77209 0.74511 1.24663 1.20527 1.16648 1.21926 0.91209 0.94809 0.91964 0.84391 0.82007 0.86850 0.87622 0.95439 0.94961 0.94780 0.97067 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -16.15 18.54 20.01 0.37 -15.78 15 2 C 0.23 5.50 14.98 89.44 1.34 6.84 15 3 C 0.00 -0.06 5.24 28.79 0.15 0.09 15 4 C -0.09 -2.03 3.05 -9.40 -0.03 -2.06 15 5 H 0.08 2.01 8.14 -2.39 -0.02 1.99 15 6 C -0.10 -2.23 6.42 31.79 0.20 -2.03 15 7 C 0.09 3.35 4.61 86.73 0.40 3.75 15 8 N -0.64 -30.53 3.33 -691.97 -2.30 -32.84 15 9 C -0.32 -19.09 10.56 84.03 0.89 -18.21 15 10 H 0.03 2.22 8.06 -2.91 -0.02 2.20 15 11 C -0.09 -5.20 5.50 84.86 0.47 -4.73 15 12 N -0.97 -64.07 13.71 21.65 0.30 -63.77 15 13 Si 1.12 53.02 24.52 68.60 1.68 54.70 15 14 H -0.32 -15.67 7.11 99.48 0.71 -14.97 15 15 H -0.28 -12.14 6.82 99.48 0.68 -11.47 15 16 H -0.24 -9.76 5.41 99.48 0.54 -9.22 15 17 C 0.13 4.69 6.25 86.86 0.54 5.23 15 18 H 0.14 1.26 8.10 -2.39 -0.02 1.24 15 19 H 0.16 0.70 8.14 -2.39 -0.02 0.68 15 20 H 0.11 1.69 8.14 -2.39 -0.02 1.67 15 21 H 0.11 1.67 8.04 -2.39 -0.02 1.65 15 22 H 0.03 1.09 3.89 -2.38 -0.01 1.08 15 23 H 0.03 1.30 6.70 -2.39 -0.02 1.29 15 24 H 0.24 16.35 8.73 -92.71 -0.81 15.54 15 25 H 0.01 0.46 8.14 -2.39 -0.02 0.44 15 26 H 0.04 1.30 8.00 -2.39 -0.02 1.29 15 Total: -1.00 -80.34 220.12 4.94 -75.41 By element: Atomic # 1 Polarization: -7.53 SS G_CDS: 0.93 Total: -6.60 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 3.96 Total: -11.12 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -1.64 Total: -112.39 kcal Atomic # 14 Polarization: 53.02 SS G_CDS: 1.68 Total: 54.70 kcal Total: -80.34 4.94 -75.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307195935.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.850 kcal (2) G-P(sol) polarization free energy of solvation -80.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds