Wall clock time and date at job start Mon Mar 30 2020 01:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99913 * 2 1 4 4 H 1.48499 * 109.47121 * 270.00195 * 3 2 1 5 5 H 1.48508 * 109.46890 * 29.99677 * 3 2 1 6 6 H 1.48496 * 109.47438 * 149.99610 * 3 2 1 7 7 C 1.37880 * 120.00432 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99501 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00024 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46695 * 180.02562 * 9 7 2 11 11 C 1.31001 * 119.99904 * 120.30896 * 10 9 7 12 12 C 1.50701 * 120.00147 * 353.84344 * 11 10 9 13 13 H 1.08999 * 115.56121 * 330.01764 * 12 11 10 14 14 C 1.53068 * 117.51427 * 184.30965 * 12 11 10 15 15 C 1.53001 * 117.49687 * 115.69857 * 12 11 10 16 16 H 1.08995 * 117.49718 * 215.00494 * 15 12 11 17 17 C 1.50697 * 117.49677 * 0.02562 * 15 12 11 18 18 O 1.20758 * 120.00235 * 239.63133 * 17 15 12 19 19 H 0.97001 * 120.00155 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46925 * 59.99996 * 9 7 2 21 21 H 1.08997 * 109.47166 * 299.99984 * 9 7 2 22 22 H 1.08001 * 120.00133 * 300.29719 * 10 9 7 23 23 H 1.07999 * 119.99884 * 173.84981 * 11 10 9 24 24 H 1.08997 * 117.49427 * 145.03950 * 14 12 11 25 25 H 1.09006 * 117.51067 * 0.02562 * 14 12 11 26 26 H 1.08002 * 120.00000 * 59.91589 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0139 -2.6148 0.0010 11 6 4.7724 -3.0412 -0.9782 12 6 5.0292 -2.1581 -2.1721 13 1 4.2287 -1.4621 -2.4230 14 6 5.8396 -2.7496 -3.3280 15 6 6.4679 -1.6966 -2.4130 16 1 6.6139 -0.6969 -2.8221 17 6 7.5198 -2.1604 -1.4387 18 8 8.1606 -1.3516 -0.8114 19 1 -0.4850 0.8400 -0.0004 20 1 3.8745 -0.6799 0.8911 21 1 3.8752 -0.6803 -0.8888 22 1 3.7488 -3.2814 0.8083 23 1 5.2137 -4.0258 -0.9300 24 1 5.5720 -2.4426 -4.3391 25 1 6.1867 -3.7778 -3.2252 26 1 7.7037 -3.2162 -1.3047 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307881513.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:44 Heat of formation + Delta-G solvation = -21.080622 kcal Electronic energy + Delta-G solvation = -10192.806483 eV Core-core repulsion = 8236.984877 eV Total energy + Delta-G solvation = -1955.821606 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.41910 -38.43436 -35.80084 -33.98889 -29.88886 -26.28096 -24.68043 -23.32290 -21.72115 -19.05102 -18.93698 -17.33223 -16.66743 -16.36839 -15.93282 -15.10234 -14.85371 -14.55710 -14.01446 -13.77789 -13.19120 -12.78635 -12.26063 -12.02498 -11.83928 -11.72631 -11.37311 -11.15696 -10.79361 -10.63276 -9.50210 -8.33326 -6.36567 0.93728 1.30124 1.33062 1.43917 1.45496 2.31165 3.00654 3.07390 3.36501 3.77596 3.95184 4.06366 4.39102 4.45856 4.76075 4.80140 4.98104 5.05166 5.12267 5.25525 5.38988 5.54060 5.79894 6.15848 6.26633 6.47642 6.71100 7.27350 8.83350 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.047698 B = 0.011216 C = 0.010385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.887471 B = 2495.731519 C = 2695.424202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.524 4.524 8 H 0.035 0.965 9 C 0.001 3.999 10 C -0.128 4.128 11 C -0.161 4.161 12 C -0.109 4.109 13 H 0.095 0.905 14 C -0.115 4.115 15 C -0.245 4.245 16 H 0.111 0.889 17 C 0.387 3.613 18 O -0.514 6.514 19 H 0.267 0.733 20 H 0.018 0.982 21 H 0.031 0.969 22 H 0.107 0.893 23 H 0.145 0.855 24 H 0.116 0.884 25 H 0.135 0.865 26 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.501 -5.823 -6.448 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.562 4.562 8 H 0.053 0.947 9 C -0.036 4.036 10 C -0.146 4.146 11 C -0.178 4.178 12 C -0.128 4.128 13 H 0.113 0.887 14 C -0.151 4.151 15 C -0.264 4.264 16 H 0.129 0.871 17 C 0.247 3.753 18 O -0.388 6.388 19 H 0.076 0.924 20 H 0.036 0.964 21 H 0.049 0.951 22 H 0.125 0.875 23 H 0.163 0.837 24 H 0.134 0.866 25 H 0.153 0.847 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.697 -5.278 -6.114 15.901 hybrid contribution -0.545 1.001 0.191 1.156 sum 13.152 -4.276 -5.923 15.044 Atomic orbital electron populations 1.70045 1.08082 1.28168 1.52565 1.25924 0.95543 1.03088 0.94207 0.85753 0.79297 0.78882 0.79361 1.18878 1.20569 1.17978 1.21321 0.91432 0.93128 1.50324 0.94697 1.18860 0.94219 0.93659 0.96816 1.22933 0.95811 0.96984 0.98886 1.22305 1.01816 0.99985 0.93720 1.21226 0.91670 1.01869 0.98001 0.88717 1.23229 0.98730 0.98396 0.94762 1.23409 0.95765 1.02220 1.05043 0.87098 1.25887 0.77413 0.95825 0.76154 1.90372 1.45497 1.60843 1.42135 0.92370 0.96353 0.95099 0.87478 0.83708 0.86606 0.84723 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.96 13.96 21.45 0.30 -59.66 15 2 C 0.01 0.56 5.47 84.66 0.46 1.03 15 3 Si 0.94 45.50 27.47 68.60 1.88 47.38 15 4 H -0.26 -12.12 7.11 99.48 0.71 -11.41 15 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 15 6 H -0.26 -11.88 6.54 99.48 0.65 -11.23 15 7 C -0.52 -30.74 9.65 25.60 0.25 -30.49 15 8 H 0.03 2.24 7.98 -2.91 -0.02 2.21 15 9 C 0.00 0.06 4.26 29.10 0.12 0.19 15 10 C -0.13 -5.04 9.45 25.65 0.24 -4.80 15 11 C -0.16 -4.89 8.67 25.65 0.22 -4.67 15 12 C -0.11 -3.17 4.96 -11.52 -0.06 -3.23 15 13 H 0.09 3.37 6.64 -2.39 -0.02 3.36 15 14 C -0.11 -2.09 9.94 30.62 0.30 -1.79 15 15 C -0.25 -6.00 6.26 -11.54 -0.07 -6.08 15 16 H 0.11 2.89 8.14 -2.39 -0.02 2.87 15 17 C 0.39 9.31 10.34 71.23 0.74 10.05 15 18 O -0.51 -17.32 17.92 -1.44 -0.03 -17.35 15 19 H 0.27 15.73 8.31 -92.71 -0.77 14.96 15 20 H 0.02 0.91 7.20 -2.39 -0.02 0.90 15 21 H 0.03 1.45 4.95 -2.39 -0.01 1.44 15 22 H 0.11 4.02 8.06 -2.91 -0.02 3.99 15 23 H 0.15 3.16 8.06 -2.91 -0.02 3.14 15 24 H 0.12 1.83 8.14 -2.39 -0.02 1.81 15 25 H 0.13 1.59 8.14 -2.38 -0.02 1.57 15 26 H 0.14 2.03 8.06 -2.91 -0.02 2.00 15 Total: -1.00 -71.71 232.78 5.47 -66.24 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.10 Total: 3.17 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 2.21 Total: -39.79 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.30 Total: -59.66 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.03 Total: -17.35 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Total: -71.71 5.47 -66.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307881513.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.161 kcal (2) G-P(sol) polarization free energy of solvation -71.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds