Wall clock time and date at job start Mon Mar 30 2020 01:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30518 * 1 3 3 Si 1.86798 * 120.00415 * 2 1 4 4 H 1.48501 * 109.47328 * 239.99485 * 3 2 1 5 5 H 1.48504 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47236 * 119.99363 * 3 2 1 7 7 C 1.40463 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.41020 * 120.00046 * 0.02562 * 7 2 1 10 10 O 1.21427 * 120.00487 * 359.97438 * 9 7 2 11 11 C 1.50710 * 119.99839 * 179.97438 * 9 7 2 12 12 H 1.09003 * 115.55074 * 9.32044 * 11 9 7 13 13 C 1.53008 * 117.49465 * 223.61800 * 11 9 7 14 14 C 1.52996 * 117.49806 * 155.00004 * 11 9 7 15 15 H 1.09008 * 117.49672 * 215.00075 * 14 11 9 16 16 C 1.53003 * 117.50080 * 359.97438 * 14 11 9 17 17 C 1.53001 * 117.51964 * 231.28859 * 16 14 11 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 14 19 19 H 0.97002 * 119.99680 * 0.02562 * 1 2 3 20 20 H 1.08994 * 117.49478 * 145.02195 * 13 11 9 21 21 H 1.08999 * 117.49980 * 0.02562 * 13 11 9 22 22 H 1.09002 * 115.54973 * 85.58642 * 16 14 11 23 23 H 1.09001 * 117.49733 * 214.97413 * 17 16 14 24 24 H 1.08995 * 117.49577 * 359.97438 * 17 16 14 25 25 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 26 26 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.0932 1.6962 -1.2124 5 1 1.2743 2.7465 -0.0006 6 1 3.0930 1.6964 1.2126 7 6 2.0074 -1.2165 0.0005 8 1 3.0875 -1.2165 0.0001 9 6 1.3022 -2.4377 0.0005 10 8 0.0880 -2.4378 0.0005 11 6 2.0558 -3.7429 0.0005 12 1 3.1313 -3.6649 0.1598 13 6 1.5580 -4.8460 -0.9358 14 6 1.3437 -4.9697 0.5741 15 1 1.9508 -5.6988 1.1109 16 6 -0.0785 -4.7774 1.1043 17 6 -0.3824 -5.2877 2.5143 18 6 -0.2767 -3.7842 2.2512 19 1 -0.4850 0.8401 -0.0004 20 1 2.3060 -5.4938 -1.3926 21 1 0.6858 -4.6275 -1.5520 22 1 -0.8717 -4.8519 0.3603 23 1 -1.3754 -5.6980 2.6980 24 1 0.4310 -5.7609 3.0644 25 1 0.6063 -3.2681 2.6282 26 1 -1.2003 -3.2053 2.2617 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575492122.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:08 Heat of formation + Delta-G solvation = 3.440929 kcal Electronic energy + Delta-G solvation = -10714.947515 eV Core-core repulsion = 8760.189243 eV Total energy + Delta-G solvation = -1954.758272 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.36192 -35.64843 -33.86929 -32.40083 -27.19098 -23.41529 -22.43153 -21.46670 -19.76442 -18.21235 -16.31781 -15.24166 -14.76357 -14.29486 -13.50754 -12.93692 -12.38130 -11.89991 -11.43376 -11.21982 -11.04486 -10.76677 -10.49068 -10.37366 -10.10562 -9.92312 -9.75558 -9.05712 -8.74566 -8.66018 -7.21347 -6.13642 -4.78658 3.10341 3.16647 3.18999 4.07741 4.08873 4.63415 4.83536 5.37467 5.57877 5.73169 5.83447 6.02947 6.06841 6.21956 6.30290 6.34033 6.43187 6.77143 6.86123 6.91279 7.01604 7.07902 7.16742 7.33270 8.17646 8.91497 9.01690 10.44528 10.71053 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.059247 B = 0.013352 C = 0.012012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.483232 B = 2096.612974 C = 2330.461886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.084 3.916 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.392 3.608 10 O -0.527 6.527 11 C -0.179 4.179 12 H 0.091 0.909 13 C -0.164 4.164 14 C -0.115 4.115 15 H 0.091 0.909 16 C -0.084 4.084 17 C -0.210 4.210 18 C -0.132 4.132 19 H 0.271 0.729 20 H 0.080 0.920 21 H 0.092 0.908 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 -4.538 1.790 5.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.138 4.138 3 Si 0.726 3.274 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.285 3.715 10 O -0.415 6.415 11 C -0.199 4.199 12 H 0.109 0.891 13 C -0.202 4.202 14 C -0.134 4.134 15 H 0.109 0.891 16 C -0.102 4.102 17 C -0.248 4.248 18 C -0.169 4.169 19 H 0.082 0.918 20 H 0.099 0.901 21 H 0.110 0.890 22 H 0.116 0.884 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.434 -4.487 1.790 5.039 hybrid contribution 0.814 0.799 -0.048 1.141 sum 2.247 -3.688 1.742 4.657 Atomic orbital electron populations 1.69941 1.07338 1.27723 1.32073 1.25960 0.94555 1.00651 0.92643 0.86522 0.80136 0.81027 0.79704 1.19111 1.20442 1.19106 1.20715 0.94655 0.91918 1.49136 0.91727 1.18670 0.88527 0.86051 0.78253 1.90386 1.15075 1.88165 1.47867 1.23395 0.99560 0.93742 1.03184 0.89075 1.22795 1.02915 1.02140 0.92311 1.21589 0.95829 1.00512 0.95428 0.89137 1.21259 0.95456 1.03420 0.90078 1.23141 1.01247 0.99376 1.00992 1.22574 1.02843 0.89816 1.01658 0.91803 0.90117 0.88981 0.88434 0.90054 0.90063 0.89618 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.39 11.72 55.57 0.65 -20.73 15 2 C 0.08 2.30 5.50 -17.27 -0.10 2.21 15 3 Si 0.90 19.74 29.56 -169.99 -5.03 14.72 15 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 7 C -0.53 -14.94 9.22 -37.69 -0.35 -15.29 15 8 H 0.06 1.70 7.85 -52.48 -0.41 1.28 15 9 C 0.39 10.87 5.94 -33.25 -0.20 10.67 15 10 O -0.53 -15.82 11.80 5.43 0.06 -15.76 15 11 C -0.18 -4.11 6.05 -91.76 -0.56 -4.66 15 12 H 0.09 1.95 8.14 -51.93 -0.42 1.52 15 13 C -0.16 -3.30 9.86 -26.73 -0.26 -3.56 15 14 C -0.12 -2.33 5.87 -90.62 -0.53 -2.86 15 15 H 0.09 1.61 8.14 -51.92 -0.42 1.19 15 16 C -0.08 -1.75 4.20 -90.61 -0.38 -2.13 15 17 C -0.21 -3.72 10.25 -26.73 -0.27 -3.99 15 18 C -0.13 -2.84 7.91 -26.73 -0.21 -3.05 15 19 H 0.27 7.10 8.29 -40.82 -0.34 6.76 15 20 H 0.08 1.37 8.14 -51.93 -0.42 0.94 15 21 H 0.09 1.97 8.14 -51.93 -0.42 1.55 15 22 H 0.10 2.13 8.14 -51.93 -0.42 1.71 15 23 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 24 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.09 1.96 8.07 -51.93 -0.42 1.54 15 26 H 0.09 1.99 8.14 -51.93 -0.42 1.57 15 LS Contribution 228.57 15.07 3.44 3.44 Total: -1.00 -30.26 228.57 -7.07 -37.33 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -3.35 Total: 3.67 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.86 Total: -22.67 kcal Atomic # 7 Polarization: -21.39 SS G_CDS: 0.65 Total: -20.73 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.06 Total: -15.76 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.26 -7.07 -37.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575492122.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.773 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds