Wall clock time and date at job start Mon Mar 30 2020 01:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86795 * 120.00259 * 2 1 4 4 H 1.48504 * 109.46829 * 269.99559 * 3 2 1 5 5 H 1.48493 * 109.47310 * 29.99866 * 3 2 1 6 6 H 1.48503 * 109.46998 * 150.00192 * 3 2 1 7 7 C 1.40459 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.41029 * 120.00108 * 359.97438 * 7 2 1 10 10 O 1.21435 * 119.99971 * 0.02562 * 9 7 2 11 11 C 1.50703 * 119.99828 * 180.02562 * 9 7 2 12 12 H 1.09001 * 115.56061 * 355.68343 * 11 9 7 13 13 C 1.52999 * 117.49907 * 141.37870 * 11 9 7 14 14 C 1.53000 * 117.49617 * 210.00094 * 11 9 7 15 15 H 1.09001 * 117.52137 * 359.97438 * 14 11 9 16 16 C 1.53003 * 117.50040 * 145.01728 * 14 11 9 17 17 C 1.53001 * 117.51964 * 231.29786 * 16 14 11 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 14 19 19 H 0.97000 * 119.99398 * 0.02562 * 1 2 3 20 20 H 1.08993 * 117.49782 * 0.02562 * 13 11 9 21 21 H 1.08995 * 117.49728 * 214.96925 * 13 11 9 22 22 H 1.09002 * 115.54973 * 85.59570 * 16 14 11 23 23 H 1.09001 * 117.49733 * 214.97413 * 17 16 14 24 24 H 1.08995 * 117.49577 * 359.97438 * 17 16 14 25 25 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 26 26 H 1.09004 * 117.51638 * 107.47550 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.4869 2.0462 -1.4001 5 1 1.4368 2.6526 0.7000 6 1 3.5369 1.4400 0.7000 7 6 2.0074 -1.2165 0.0005 8 1 3.0874 -1.2166 0.0010 9 6 1.3022 -2.4378 0.0016 10 8 0.0879 -2.4377 0.0016 11 6 2.0557 -3.7429 0.0028 12 1 3.1400 -3.6600 -0.0713 13 6 1.4906 -4.8841 0.8509 14 6 1.3910 -4.9429 -0.6747 15 1 0.4085 -4.7889 -1.1210 16 6 2.2992 -5.9348 -1.4043 17 6 1.9373 -6.2959 -2.8464 18 6 3.1440 -5.3993 -2.5621 19 1 -0.4849 0.8401 -0.0004 20 1 0.5737 -4.6910 1.4076 21 1 2.2032 -5.5521 1.3347 22 1 2.7346 -6.7179 -0.7836 23 1 2.1346 -7.3165 -3.1744 24 1 1.0518 -5.8271 -3.2755 25 1 3.0526 -4.3405 -2.8042 26 1 4.1355 -5.8299 -2.7027 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575492124.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:11 Heat of formation + Delta-G solvation = -3.932688 kcal Electronic energy + Delta-G solvation = -10362.889711 eV Core-core repulsion = 8407.811695 eV Total energy + Delta-G solvation = -1955.078016 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.30912 -36.30849 -33.88035 -32.43418 -27.26036 -23.71782 -22.41881 -22.01479 -19.70107 -18.44538 -16.44835 -15.36361 -15.22799 -14.35896 -13.62900 -13.13308 -12.39449 -11.87241 -11.57115 -11.26019 -11.21848 -11.02318 -10.85444 -10.42715 -10.19947 -10.16302 -10.12116 -9.25269 -8.97692 -8.71969 -7.34820 -6.20436 -4.85023 3.06848 3.15643 3.19633 3.93035 4.05888 4.25540 4.71801 5.08266 5.27044 5.36016 5.61907 5.79897 5.86964 5.92613 6.05079 6.22389 6.30804 6.42896 6.46715 6.61044 6.80473 6.99059 7.10905 7.29802 8.14360 8.86751 8.96307 10.39741 10.64349 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.059826 B = 0.010758 C = 0.010078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.907788 B = 2601.991191 C = 2777.706296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.082 3.918 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.387 3.613 10 O -0.547 6.547 11 C -0.171 4.171 12 H 0.094 0.906 13 C -0.162 4.162 14 C -0.117 4.117 15 H 0.105 0.895 16 C -0.117 4.117 17 C -0.182 4.182 18 C -0.179 4.179 19 H 0.272 0.728 20 H 0.092 0.908 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -6.011 -2.325 8.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.087 0.913 9 C 0.282 3.718 10 O -0.436 6.436 11 C -0.191 4.191 12 H 0.113 0.887 13 C -0.199 4.199 14 C -0.135 4.135 15 H 0.123 0.877 16 C -0.135 4.135 17 C -0.219 4.219 18 C -0.216 4.216 19 H 0.083 0.917 20 H 0.111 0.889 21 H 0.100 0.900 22 H 0.116 0.884 23 H 0.106 0.894 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.586 -5.963 -2.321 7.873 hybrid contribution 0.708 0.751 0.005 1.032 sum 5.294 -5.213 -2.316 7.782 Atomic orbital electron populations 1.69965 1.07525 1.27844 1.31688 1.26030 0.94584 1.00931 0.92557 0.86402 0.80484 0.81067 0.79120 1.19462 1.20243 1.18579 1.20767 0.94838 0.91777 1.48588 0.91315 1.18853 0.88402 0.86537 0.78017 1.90386 1.15524 1.88523 1.49207 1.23303 0.99739 0.92888 1.03132 0.88732 1.22806 1.02751 1.01672 0.92688 1.21635 0.99616 0.98276 0.93948 0.87684 1.21761 1.01509 1.00271 0.89937 1.22942 0.99929 0.99848 0.99138 1.22957 0.94851 1.00297 1.03451 0.91689 0.88943 0.90033 0.88370 0.89418 0.88847 0.88301 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.91 11.72 55.57 0.65 -21.26 15 2 C 0.08 2.27 5.50 -17.27 -0.10 2.17 15 3 Si 0.91 19.80 29.56 -169.99 -5.03 14.77 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 15 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 15 7 C -0.53 -15.07 9.22 -37.69 -0.35 -15.41 15 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 15 9 C 0.39 11.16 6.66 -33.25 -0.22 10.94 15 10 O -0.55 -17.68 14.99 5.42 0.08 -17.60 15 11 C -0.17 -3.97 5.71 -91.77 -0.52 -4.49 15 12 H 0.09 2.05 8.14 -51.93 -0.42 1.63 15 13 C -0.16 -3.29 9.81 -26.73 -0.26 -3.55 15 14 C -0.12 -2.37 5.40 -90.62 -0.49 -2.86 15 15 H 0.11 2.37 7.98 -51.93 -0.41 1.95 15 16 C -0.12 -1.91 5.87 -90.61 -0.53 -2.44 15 17 C -0.18 -2.63 10.25 -26.73 -0.27 -2.90 15 18 C -0.18 -2.72 10.18 -26.73 -0.27 -2.99 15 19 H 0.27 7.21 8.29 -40.82 -0.34 6.87 15 20 H 0.09 2.01 8.12 -51.93 -0.42 1.59 15 21 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 22 H 0.10 1.44 8.14 -51.93 -0.42 1.02 15 23 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 24 H 0.09 1.41 8.14 -51.93 -0.42 0.98 15 25 H 0.10 1.67 8.14 -51.93 -0.42 1.25 15 26 H 0.09 1.14 8.14 -51.93 -0.42 0.71 15 LS Contribution 235.44 15.07 3.55 3.55 Total: -1.00 -31.96 235.44 -7.10 -39.06 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -3.34 Total: 3.03 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -3.02 Total: -21.54 kcal Atomic # 7 Polarization: -21.91 SS G_CDS: 0.65 Total: -21.26 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.08 Total: -17.60 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.96 -7.10 -39.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575492124.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.125 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds