Wall clock time and date at job start Mon Mar 30 2020 01:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86795 * 120.00259 * 2 1 4 4 H 1.48504 * 109.46829 * 269.99559 * 3 2 1 5 5 H 1.48493 * 109.47310 * 29.99866 * 3 2 1 6 6 H 1.48503 * 109.46998 * 150.00192 * 3 2 1 7 7 C 1.40459 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.41029 * 120.00108 * 359.97438 * 7 2 1 10 10 O 1.21435 * 119.99971 * 0.02562 * 9 7 2 11 11 C 1.50703 * 119.99828 * 180.02562 * 9 7 2 12 12 H 1.09001 * 115.56061 * 355.68343 * 11 9 7 13 13 C 1.52999 * 117.49907 * 141.37870 * 11 9 7 14 14 C 1.53000 * 117.49617 * 210.00094 * 11 9 7 15 15 H 1.09001 * 117.52137 * 359.97438 * 14 11 9 16 16 C 1.53003 * 117.50040 * 145.01728 * 14 11 9 17 17 C 1.53001 * 117.51964 * 231.29786 * 16 14 11 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 14 19 19 H 0.97000 * 119.99398 * 0.02562 * 1 2 3 20 20 H 1.08993 * 117.49782 * 0.02562 * 13 11 9 21 21 H 1.08995 * 117.49728 * 214.96925 * 13 11 9 22 22 H 1.09002 * 115.54973 * 85.59570 * 16 14 11 23 23 H 1.09001 * 117.49733 * 214.97413 * 17 16 14 24 24 H 1.08995 * 117.49577 * 359.97438 * 17 16 14 25 25 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 26 26 H 1.09004 * 117.51638 * 107.47550 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.4869 2.0462 -1.4001 5 1 1.4368 2.6526 0.7000 6 1 3.5369 1.4400 0.7000 7 6 2.0074 -1.2165 0.0005 8 1 3.0874 -1.2166 0.0010 9 6 1.3022 -2.4378 0.0016 10 8 0.0879 -2.4377 0.0016 11 6 2.0557 -3.7429 0.0028 12 1 3.1400 -3.6600 -0.0713 13 6 1.4906 -4.8841 0.8509 14 6 1.3910 -4.9429 -0.6747 15 1 0.4085 -4.7889 -1.1210 16 6 2.2992 -5.9348 -1.4043 17 6 1.9373 -6.2959 -2.8464 18 6 3.1440 -5.3993 -2.5621 19 1 -0.4849 0.8401 -0.0004 20 1 0.5737 -4.6910 1.4076 21 1 2.2032 -5.5521 1.3347 22 1 2.7346 -6.7179 -0.7836 23 1 2.1346 -7.3165 -3.1744 24 1 1.0518 -5.8271 -3.2755 25 1 3.0526 -4.3405 -2.8042 26 1 4.1355 -5.8299 -2.7027 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575492124.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:10 Heat of formation + Delta-G solvation = -23.527239 kcal Electronic energy + Delta-G solvation = -10363.739394 eV Core-core repulsion = 8407.811695 eV Total energy + Delta-G solvation = -1955.927699 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.03962 -38.09196 -35.58334 -34.59368 -29.45106 -25.43317 -24.12153 -23.20450 -21.34183 -20.25549 -18.55641 -17.37934 -16.52399 -15.99395 -15.35733 -14.95658 -14.25154 -13.80839 -13.46168 -13.12894 -12.78653 -12.46400 -12.30649 -12.21436 -12.08918 -11.70289 -11.54731 -11.00805 -10.79109 -10.39878 -9.54721 -8.31825 -7.11545 1.32991 1.36083 1.53622 2.03749 2.20325 2.76331 3.07941 3.49348 3.79470 4.02096 4.12634 4.24829 4.27016 4.55052 4.60702 4.73958 4.80733 4.91161 5.04011 5.17960 5.24076 5.31543 5.33273 5.41738 5.96429 6.69928 6.81316 8.27284 8.50725 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.059826 B = 0.010758 C = 0.010078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.907788 B = 2601.991191 C = 2777.706296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.024 3.976 3 Si 0.997 3.003 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.247 1.247 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.600 6.600 11 C -0.194 4.194 12 H 0.111 0.889 13 C -0.145 4.145 14 C -0.103 4.103 15 H 0.071 0.929 16 C -0.126 4.126 17 C -0.170 4.170 18 C -0.177 4.177 19 H 0.281 0.719 20 H 0.068 0.932 21 H 0.125 0.875 22 H 0.128 0.872 23 H 0.122 0.878 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.647 -6.509 -2.561 10.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.195 4.195 3 Si 0.815 3.185 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.170 1.170 7 C -0.591 4.591 8 H 0.103 0.897 9 C 0.259 3.741 10 O -0.494 6.494 11 C -0.213 4.213 12 H 0.129 0.871 13 C -0.182 4.182 14 C -0.122 4.122 15 H 0.089 0.911 16 C -0.144 4.144 17 C -0.207 4.207 18 C -0.214 4.214 19 H 0.092 0.908 20 H 0.087 0.913 21 H 0.143 0.857 22 H 0.146 0.854 23 H 0.140 0.860 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.907 -6.482 -2.559 9.811 hybrid contribution -0.062 0.886 0.068 0.891 sum 6.844 -5.595 -2.491 9.185 Atomic orbital electron populations 1.70105 1.09994 1.29764 1.32273 1.27320 0.95498 1.05675 0.90988 0.85039 0.79022 0.74617 0.79825 1.18206 1.19161 1.17040 1.21329 0.95900 0.92849 1.48995 0.89680 1.19640 0.88210 0.89330 0.76933 1.90337 1.17578 1.89808 1.51675 1.22987 0.99913 0.91414 1.06976 0.87074 1.22877 1.02293 1.00289 0.92763 1.21600 0.98612 0.97498 0.94467 0.91110 1.21763 1.01683 1.00179 0.90771 1.23046 0.99017 1.01376 0.97285 1.23000 0.96646 0.99291 1.02430 0.90839 0.91308 0.85704 0.85435 0.85996 0.90371 0.90897 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.33 11.72 21.91 0.26 -48.07 15 2 C 0.02 1.33 5.50 85.43 0.47 1.80 15 3 Si 1.00 40.45 29.56 68.60 2.03 42.48 15 4 H -0.26 -9.91 7.11 99.48 0.71 -9.21 15 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 6 H -0.25 -9.37 7.11 99.48 0.71 -8.67 15 7 C -0.56 -32.60 9.22 23.50 0.22 -32.39 15 8 H 0.09 4.49 7.85 -2.91 -0.02 4.47 15 9 C 0.36 21.58 6.66 26.37 0.18 21.75 15 10 O -0.60 -40.99 14.99 -3.51 -0.05 -41.04 15 11 C -0.19 -9.06 5.71 -11.54 -0.07 -9.12 15 12 H 0.11 4.73 8.14 -2.39 -0.02 4.71 15 13 C -0.15 -5.82 9.81 30.59 0.30 -5.52 15 14 C -0.10 -4.21 5.40 -10.79 -0.06 -4.27 15 15 H 0.07 3.35 7.98 -2.39 -0.02 3.33 15 16 C -0.13 -3.80 5.87 -10.79 -0.06 -3.86 15 17 C -0.17 -4.51 10.25 30.59 0.31 -4.19 15 18 C -0.18 -4.95 10.18 30.60 0.31 -4.64 15 19 H 0.28 15.29 8.29 -92.71 -0.77 14.52 15 20 H 0.07 3.07 8.12 -2.39 -0.02 3.05 15 21 H 0.12 3.89 8.14 -2.39 -0.02 3.87 15 22 H 0.13 3.16 8.14 -2.39 -0.02 3.14 15 23 H 0.12 2.43 8.14 -2.39 -0.02 2.41 15 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 26 H 0.12 2.60 8.14 -2.38 -0.02 2.58 15 Total: -1.00 -72.76 235.44 4.99 -67.77 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 1.15 Total: 19.29 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 1.60 Total: -40.43 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.26 Total: -48.07 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.05 Total: -41.04 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -72.76 4.99 -67.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575492124.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.247 kcal (2) G-P(sol) polarization free energy of solvation -72.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds