Wall clock time and date at job start Mon Mar 30 2020 01:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86803 * 119.99848 * 2 1 4 4 H 1.48498 * 109.47324 * 274.98857 * 3 2 1 5 5 H 1.48503 * 109.46751 * 34.99034 * 3 2 1 6 6 H 1.48497 * 109.47028 * 154.98797 * 3 2 1 7 7 C 1.40457 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00098 * 186.25583 * 7 2 1 9 9 C 1.41028 * 120.00251 * 6.25139 * 7 2 1 10 10 O 1.21436 * 119.99317 * 353.74042 * 9 7 2 11 11 C 1.50695 * 120.00128 * 173.74198 * 9 7 2 12 12 H 1.08993 * 110.81946 * 31.66093 * 11 9 7 13 13 C 1.54892 * 110.75598 * 155.00287 * 11 9 7 14 14 C 1.54262 * 104.31434 * 156.32058 * 13 11 9 15 15 H 1.08994 * 117.41469 * 116.30058 * 14 13 11 16 16 C 1.53001 * 118.19925 * 272.14301 * 14 13 11 17 17 C 1.52999 * 60.38087 * 93.61594 * 16 14 13 18 18 H 1.09004 * 119.75321 * 111.11896 * 17 16 14 19 19 C 1.54268 * 118.20011 * 266.38896 * 17 16 14 20 20 H 0.97003 * 120.00097 * 359.97438 * 1 2 3 21 21 H 1.09005 * 110.48612 * 37.57508 * 13 11 9 22 22 H 1.08997 * 110.48446 * 275.06616 * 13 11 9 23 23 H 1.08996 * 117.46125 * 201.21116 * 16 14 13 24 24 H 1.08997 * 117.46192 * 346.02042 * 16 14 13 25 25 H 1.09000 * 110.48317 * 206.46743 * 19 17 16 26 26 H 1.09000 * 110.48319 * 329.10321 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 2.3812 2.1074 -1.3947 5 1 1.4932 2.6199 0.8029 6 1 3.5854 1.4121 0.5920 7 6 2.0075 -1.2164 -0.0005 8 1 3.0828 -1.2192 0.1014 9 6 1.3088 -2.4341 -0.1341 10 8 0.0944 -2.4403 -0.1343 11 6 2.0690 -3.7274 -0.2765 12 1 3.0134 -3.6834 0.2659 13 6 1.2128 -4.9237 0.2081 14 6 1.8080 -6.1417 -0.5279 15 1 2.2659 -6.9213 0.0808 16 6 1.2647 -6.4836 -1.9167 17 6 2.5049 -5.5970 -1.7871 18 1 3.4761 -5.9754 -2.1059 19 6 2.3088 -4.0669 -1.7722 20 1 -0.4850 0.8401 0.0004 21 1 0.1683 -4.7828 -0.0701 22 1 1.3058 -5.0471 1.2871 23 1 1.4104 -7.5020 -2.2767 24 1 0.3349 -6.0053 -2.2245 25 1 3.2037 -3.5640 -2.1386 26 1 1.4413 -3.7877 -2.3703 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575499636.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:36 Heat of formation + Delta-G solvation = -49.870646 kcal Electronic energy + Delta-G solvation = -10620.432646 eV Core-core repulsion = 8663.362610 eV Total energy + Delta-G solvation = -1957.070035 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.59305 -38.25799 -34.78088 -32.50570 -29.29841 -28.82101 -24.62826 -22.05111 -20.60385 -20.31539 -18.43319 -17.19940 -17.10699 -15.72258 -15.06298 -14.52979 -14.21534 -13.89227 -13.71926 -13.20872 -12.79169 -12.70930 -12.18713 -12.09049 -11.94359 -11.75990 -11.66449 -10.97865 -10.90875 -10.51806 -9.46527 -8.28833 -7.09812 1.33561 1.36335 1.53732 2.15597 2.20926 2.77220 3.39463 3.64470 3.89339 3.99028 4.34901 4.41949 4.57033 4.64928 4.74214 4.87743 4.90149 4.99771 5.06422 5.19990 5.28061 5.32578 5.39290 5.59094 5.98014 6.72137 6.83970 8.28919 8.52299 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.083049 B = 0.011214 C = 0.010605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.067559 B = 2496.339070 C = 2639.723101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.025 3.975 3 Si 0.994 3.006 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.247 1.247 7 C -0.566 4.566 8 H 0.084 0.916 9 C 0.347 3.653 10 O -0.597 6.597 11 C -0.129 4.129 12 H 0.082 0.918 13 C -0.084 4.084 14 C -0.165 4.165 15 H 0.133 0.867 16 C -0.149 4.149 17 C -0.162 4.162 18 H 0.137 0.863 19 C -0.074 4.074 20 H 0.281 0.719 21 H 0.041 0.959 22 H 0.060 0.940 23 H 0.129 0.871 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.087 -6.266 -2.398 9.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.194 4.194 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.170 1.170 7 C -0.597 4.597 8 H 0.103 0.897 9 C 0.245 3.755 10 O -0.490 6.490 11 C -0.149 4.149 12 H 0.101 0.899 13 C -0.122 4.122 14 C -0.183 4.183 15 H 0.151 0.849 16 C -0.186 4.186 17 C -0.179 4.179 18 H 0.155 0.845 19 C -0.112 4.112 20 H 0.091 0.909 21 H 0.060 0.940 22 H 0.079 0.921 23 H 0.147 0.853 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.353 -6.235 -2.386 9.216 hybrid contribution 0.000 0.882 0.135 0.892 sum 6.353 -5.354 -2.251 8.608 Atomic orbital electron populations 1.70101 1.09973 1.29706 1.32417 1.27293 0.95443 1.05630 0.90989 0.85067 0.79192 0.74923 0.79571 1.18392 1.19220 1.17020 1.21406 0.96307 0.93281 1.48716 0.89747 1.20157 0.88547 0.89903 0.76885 1.90333 1.17767 1.89337 1.51593 1.22772 0.99224 0.95633 0.97245 0.89934 1.21756 0.98473 0.92848 0.99080 1.23258 1.05094 0.99800 0.90159 0.84919 1.23133 0.96593 1.00855 0.98015 1.23301 0.98384 0.92469 1.03776 0.84509 1.21754 1.00499 0.94612 0.94325 0.90889 0.94041 0.92122 0.85299 0.91137 0.90478 0.94699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.15 11.75 21.91 0.26 -47.90 15 2 C 0.03 1.40 5.50 85.43 0.47 1.87 15 3 Si 0.99 40.32 29.57 68.60 2.03 42.35 15 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 15 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 6 H -0.25 -9.35 7.11 99.48 0.71 -8.64 15 7 C -0.57 -32.58 9.21 23.50 0.22 -32.36 15 8 H 0.08 4.41 7.86 -2.91 -0.02 4.39 15 9 C 0.35 20.44 6.08 26.37 0.16 20.60 15 10 O -0.60 -40.40 14.38 -3.51 -0.05 -40.46 15 11 C -0.13 -5.96 3.18 -10.13 -0.03 -5.99 15 12 H 0.08 3.53 8.13 -2.39 -0.02 3.51 15 13 C -0.08 -3.53 5.92 31.67 0.19 -3.34 15 14 C -0.17 -5.20 6.94 -10.07 -0.07 -5.27 15 15 H 0.13 3.38 8.14 -2.39 -0.02 3.36 15 16 C -0.15 -4.27 10.07 30.59 0.31 -3.96 15 17 C -0.16 -4.94 6.94 -10.07 -0.07 -5.01 15 18 H 0.14 3.30 8.14 -2.39 -0.02 3.28 15 19 C -0.07 -2.96 6.07 31.79 0.19 -2.76 15 20 H 0.28 15.21 8.29 -92.71 -0.77 14.45 15 21 H 0.04 2.01 7.24 -2.38 -0.02 2.00 15 22 H 0.06 2.42 8.14 -2.39 -0.02 2.40 15 23 H 0.13 2.72 8.14 -2.39 -0.02 2.70 15 24 H 0.07 2.32 8.14 -2.39 -0.02 2.30 15 25 H 0.08 2.81 8.14 -2.39 -0.02 2.79 15 26 H 0.03 1.56 8.05 -2.39 -0.02 1.54 15 Total: -1.00 -71.85 225.35 4.76 -67.10 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.16 Total: 15.13 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 1.36 Total: -36.22 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.26 Total: -47.90 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -0.05 Total: -40.46 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -71.85 4.76 -67.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575499636.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.228 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds