Wall clock time and date at job start Mon Mar 30 2020 01:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86801 * 120.00278 * 2 1 4 4 H 1.48500 * 109.46965 * 239.99834 * 3 2 1 5 5 H 1.48503 * 109.46732 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47248 * 119.99569 * 3 2 1 7 7 C 1.40460 * 119.99547 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99476 * 180.02562 * 7 2 1 9 9 C 1.41024 * 120.00692 * 0.02562 * 7 2 1 10 10 O 1.21439 * 119.99672 * 0.02562 * 9 7 2 11 11 C 1.50694 * 120.00453 * 179.97438 * 9 7 2 12 12 C 1.53006 * 119.29559 * 109.76913 * 11 9 7 13 13 C 1.53001 * 60.37447 * 112.24213 * 12 11 9 14 14 H 1.08998 * 119.30101 * 248.68946 * 13 12 11 15 15 C 1.54269 * 118.19506 * 93.61780 * 13 12 11 16 16 C 1.54887 * 104.19647 * 272.20715 * 15 13 12 17 17 C 1.54265 * 117.41634 * 315.43183 * 11 9 7 18 18 H 0.96995 * 119.99816 * 0.02562 * 1 2 3 19 19 H 1.08995 * 117.45979 * 219.84252 * 12 11 9 20 20 H 1.08997 * 117.45805 * 4.64675 * 12 11 9 21 21 H 1.09006 * 110.48400 * 153.53213 * 15 13 12 22 22 H 1.08994 * 110.60242 * 30.94462 * 15 13 12 23 23 H 1.09006 * 110.75706 * 279.63015 * 16 15 13 24 24 H 1.08999 * 110.91540 * 156.33150 * 16 15 13 25 25 H 1.09005 * 110.48061 * 1.09773 * 17 11 9 26 26 H 1.09003 * 110.48759 * 123.73544 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.0931 1.6963 -1.2125 5 1 1.2743 2.7464 -0.0006 6 1 3.0930 1.6964 1.2125 7 6 2.0074 -1.2165 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3024 -2.4378 0.0005 10 8 0.0880 -2.4378 -0.0004 11 6 2.0558 -3.7429 0.0005 12 6 2.0392 -4.6169 1.2563 13 6 1.3358 -5.1027 -0.0126 14 1 0.2479 -5.1679 -0.0278 15 6 2.1234 -6.0090 -0.9812 16 6 2.8535 -5.0172 -1.9206 17 6 3.2558 -3.8703 -0.9604 18 1 -0.4849 0.8400 -0.0004 19 1 2.9690 -5.1119 1.5364 20 1 1.4114 -4.2926 2.0862 21 1 1.4425 -6.6422 -1.5501 22 1 2.8439 -6.6185 -0.4359 23 1 2.1801 -4.6530 -2.6965 24 1 3.7366 -5.4784 -2.3628 25 1 3.4013 -2.9426 -1.5140 26 1 4.1592 -4.1328 -0.4099 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575533778.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:20 Heat of formation + Delta-G solvation = -29.300785 kcal Electronic energy + Delta-G solvation = -10721.930736 eV Core-core repulsion = 8765.752677 eV Total energy + Delta-G solvation = -1956.178059 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.01472 -35.76749 -32.58177 -30.81790 -28.33834 -26.29891 -22.41815 -21.15625 -19.73240 -17.97938 -16.07069 -15.56128 -14.54478 -14.23206 -13.09915 -12.74878 -12.55215 -12.30169 -11.82926 -11.34337 -11.11029 -10.88028 -10.52230 -10.41427 -10.32372 -10.26805 -9.96353 -9.38576 -8.90557 -8.57760 -7.31737 -6.19164 -4.83731 3.09400 3.15531 3.17962 4.05668 4.11168 4.58256 5.16556 5.37251 5.41523 5.69695 5.95418 5.98355 6.08581 6.20427 6.25326 6.34105 6.40190 6.48246 6.59217 6.81651 7.02488 7.07702 7.13487 7.31809 8.16536 8.88125 8.98060 10.40999 10.65359 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.064520 B = 0.013042 C = 0.012044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.871327 B = 2146.398192 C = 2324.231681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.081 3.919 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.069 0.931 9 C 0.401 3.599 10 O -0.546 6.546 11 C -0.158 4.158 12 C -0.140 4.140 13 C -0.165 4.165 14 H 0.106 0.894 15 C -0.090 4.090 16 C -0.123 4.123 17 C -0.081 4.081 18 H 0.272 0.728 19 H 0.080 0.920 20 H 0.091 0.909 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 -4.999 -1.134 7.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.296 3.704 10 O -0.434 6.434 11 C -0.159 4.159 12 C -0.177 4.177 13 C -0.183 4.183 14 H 0.124 0.876 15 C -0.127 4.127 16 C -0.161 4.161 17 C -0.118 4.118 18 H 0.084 0.916 19 H 0.099 0.901 20 H 0.109 0.891 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.245 -4.948 -1.151 7.302 hybrid contribution 0.583 0.790 0.063 0.984 sum 5.828 -4.158 -1.088 7.241 Atomic orbital electron populations 1.69956 1.07513 1.27933 1.31756 1.26037 0.94576 1.00904 0.92607 0.86467 0.80089 0.80745 0.79798 1.18984 1.20385 1.18981 1.20672 0.94839 0.91522 1.48632 0.91236 1.18620 0.88072 0.85923 0.77794 1.90394 1.15523 1.88388 1.49124 1.23402 0.99162 0.94698 0.98655 1.22840 1.01025 1.02319 0.91536 1.23088 0.98646 0.97387 0.99199 0.87598 1.21885 0.97894 0.96677 0.96293 1.22687 0.99135 0.96134 0.98117 1.21824 0.95649 0.98489 0.95870 0.91649 0.90137 0.89088 0.92128 0.92269 0.91576 0.92307 0.90534 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.97 11.72 55.57 0.65 -21.32 15 2 C 0.08 2.25 5.50 -17.27 -0.10 2.16 15 3 Si 0.90 19.79 29.56 -169.99 -5.03 14.76 15 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 7 C -0.52 -14.87 8.56 -37.69 -0.32 -15.19 15 8 H 0.07 1.82 7.58 -52.48 -0.40 1.42 15 9 C 0.40 11.61 6.59 -33.26 -0.22 11.39 15 10 O -0.55 -17.87 15.35 5.42 0.08 -17.78 15 11 C -0.16 -3.66 2.60 -154.55 -0.40 -4.07 15 12 C -0.14 -2.84 9.86 -26.73 -0.26 -3.11 15 13 C -0.17 -3.40 6.60 -89.50 -0.59 -3.99 15 14 H 0.11 2.34 8.14 -51.93 -0.42 1.92 15 15 C -0.09 -1.50 6.62 -25.07 -0.17 -1.66 15 16 C -0.12 -2.08 6.91 -24.74 -0.17 -2.25 15 17 C -0.08 -1.58 6.17 -25.07 -0.15 -1.74 15 18 H 0.27 7.25 8.29 -40.82 -0.34 6.91 15 19 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 20 H 0.09 1.92 8.14 -51.93 -0.42 1.49 15 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 23 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.08 1.57 7.39 -51.93 -0.38 1.19 15 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 LS Contribution 225.78 15.07 3.40 3.40 Total: -1.00 -32.27 225.78 -6.57 -38.84 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -3.30 Total: 0.55 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.38 Total: -18.45 kcal Atomic # 7 Polarization: -21.97 SS G_CDS: 0.65 Total: -21.32 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.08 Total: -17.78 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -32.27 -6.57 -38.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575533778.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.538 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds